Detail information of GWHGAAEX008625/evm.TU.scaffold_226.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-141 | FOG: PPR repeat |
| nr | gi|672164234|ref|XP_008801987.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LW63|PP251_ARATH | 9.00E-142 | Putative pentatricopeptide repeat-containing protein At3g23330 |
| trEMBL | tr|F6H438|F6H438_VITVI | 4.00E-160 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46981.1} |
| TAIR | AT3G23330 | 3.00E-141 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000226 | 564698 | 567001 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008625
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 125 | 169 | 5.40E-09 |
| PF01535.19 | PPR | 202 | 229 | 0.01 |
| PF01535.19 | PPR | 230 | 256 | 2.90E-06 |
| PF13041.5 | PPR_2 | 333 | 381 | 2.40E-10 |
| PF01535.19 | PPR | 409 | 432 | 0.02 |
| PF14432.5 | DYW_deaminase | 508 | 630 | 2.10E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.590 |
| SRR2545915 | Juvenile tuber | 0.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.180 |
| SRR5643514 | five period of Gastrodia elata | 1.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.630 | |
| SRR5643524 | five period of Gastrodia elata | 0.870 | |
| SRR5643525 | five period of Gastrodia elata | 0.160 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.330 | |
| SRR5643659 | five period of Gastrodia elata | 0.740 | |
| SRR5643660 | five period of Gastrodia elata | 1.080 | |
| SRR5643661 | five period of Gastrodia elata | 0.700 | |
| SRR5643662 | five period of Gastrodia elata | 1.140 | |
| SRR5643663 | five period of Gastrodia elata | 0.620 | |
| SRR5643664 | five period of Gastrodia elata | 0.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.19 |
| Juven | Juvenile tuber | 0.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.12 | |
| Mother_Juven | Mother tuber of Juvenile | 0.03 |