Gene detail

Detail information of GWHGAAEX008626/evm.TU.scaffold_226.28

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|163857022\|ref\|YP_001631320.1\|	2.00E-08	hypothetical protein Bpet2710 [Bordetella petrii DSM 12804]
nr	gi\|663441887\|gb\|AIF28354.1\|	0	PIN-like protein, partial [Talbotia elegans]
Swissprot	tr\|Q8RWZ6\|PIN4_ARATH	0	Auxin efflux carrier component 4
trEMBL	tr\|A0A075IIW8\|A0A075IIW8_9LILI	0	PIN-like protein {ECO:0000313\|EMBL:AIF28354.1} (Fragment)
TAIR	AT2G01420	0	Auxin efflux carrier family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000226	616306	619118	+

Transcript Sequence
>GWHTAAEX008626 GCGATTTCCCCGCCCACTTCCCACACTCCCCAAACGAAATCAATCCACCCCCAAAAAAATATTCACCAAAGGACAGAACTCGCATCGCAGGCCTTCTCTGTCGCAGCTGAGCTCTGCAGCGCATGCCTGCACTGCCATCCCGGCGAAATGATATCGTGGAGAGACCTGTACTCCGTTCTCACAGCCGTGGTGCCGCTCTACGTCGCCATGATCCTCGCCTACGGCTCCGTCCGTTGGTGGCGGATCTTCTCGCCGGAACAGTGCTCCGGCATCAACCGCTTCGTCGCCGTTTTCGCCGTTCCGCTTCTCTCTTTTCACTTCATCTCCTCCAACGATCCCTACGCCATGAACTTCCGATTCGTGGCCGCGGACACGTTGCAGAAGGCGATCGTCCTCGCCGCGCTCGCGGTTTGGTCCCACCTCGCCAAGCGCGGATCCATGGATTGGTCCATCACCCTCTTCTCCCTCTCCACCCTCCCCAACACTCTGGTCATGGGTATCCCGCTTCTCATCGCCATGTACGGCCCCTACTCCGGATCTCTCATGGTCCAGATCGTCGTCCTCCAATGCATCATCTGGTACACCATCCTACTCTTCCTCTTCGAGTACCGCGCCGCGCGGATCCTCATCTCCGATCAGTTCCCCGATACGGCCGCCTCCATCGTCTCCTTCCGGGTCGACTCCGATGTCACCTCTCTCGAAGCCGGGAGGAATTTCATACAGACGGAAGCAGAGTTGGGCGAAGAAGGCAAGATTCATGTCACCGTCAGGAAATCCACATCCTCCCGTCGATCCATCTCGCTGATGACGCCCCGCCCCTCCAATCTCACCGGCGCAGAGATCTACTCCCTCAGCTCTTCCAGGAACCCAACACCGAGGGCATCCAACTACAACCCCTCCGATTTCTTCAGCGCTCCGCCGCCTCGCCATTCGAATTTCGGCCCCGGGGATCTGTACTCAGTCCAATCATCCAGAGGGCAAACCCCGCGCCCTTCAAGCTTTGACGAGCTCTGCCGCCAGCAGGGGAGCTCTCCGAGATTCGGGAACTACCCTGTGCCGAATCCGGAGATTGCCGCCGTTTCCAAGAAGGCTCAAGCTCAGCGCGCCGACGCGAAGGAGCTCCACATGTTCGTGTGGAGCTCGGCCGGGTCTCCGGTCTCGGAGGCCGCCGGCGAACTCCCTGCTTCAAACGGAACGGATCAAGCCGCCAAGGAGATCCGCATGATCGTTCCGCCATCGGATGCTCCCGCAAACGAAGGGGCGGCGGAGGAAGAGGAAGAAGCGAAGGAGACGGGGCTGTCAAAGATTGGATCGAGCTCAATGTCGGAGGCTCATCTGAAAGGAGGCGAAGGAGGGAAGGCGGCGCAGATGCCTCCGGCGAGCGTCATGAGCCGTCTCATCCTCATCATGGTCTGGCGGAAGCTCATCCGCAACCCCAACACCTACTCCAGTCTCATCGGCCTAATCTGGTCCCTCGTGTCCTTCCGGTGGCATGTTCAGATGCCGAGAATCATTGAGAAGTCCATATCGATACTATCCGACGCTGGGCTCGGCATGGCCATGTTTAGCTTAGGGTTGTTTATGGCGCTGCAGCCGAGGATCATCGCGTGCGGGAACGCTGTGGCGGGCTTCGCCATGGCCGTCAGATTCTTAACGGGGCCGGCAGTAATGGCAGCGGCCTCCATCGCCGTCGGTATCCGCGGCGATCTTCTCAGGATCGCCGTCGTTCAGGCGGCGCTGCCCCAAGGCATCGTCCCGTTCGTCTTCGCCAAGGAGTACAACGTCTATCCGACGATACTGAGCACAGCGGTTATTTTCGGAATGTTGATTGCTCTGCCCATTACGCTGGTTTACTATATCATCCTTGGGTTATGAAGACGTCGTTCCGTACCCGGAGACCGGAAGAAGGTAAGACGGCGGCGTCAACGCCGGCGACGGGACCAGCCGGAACTGCGGCATGGTCCGGAAGTGCTTTAATAGTAATTTTGTGCAAAACGAGGTCGTTCTTGGTGGTGGTGGTGGTCCATTGAGGCTGGGAACAATTTAGCCTTTGTTTCTTCTCTTGTTTCAAGGAATTTGCGCTTTCATGTTCCATTTTTTTTGTTGCAAAATGCAATAAATAAAACGCTTAGCTTTCAATAAAAC

Network for GWHGAAEX008626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03547.17	Mem_trans	10	570	3.50E-182

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.500
SRP064423	SRR2545915	Juvenile tuber	3.430
SRP108465	SRR5643513	five period of Gastrodia elata	2.290
	SRR5643514	five period of Gastrodia elata	4.860
	SRR5643515	five period of Gastrodia elata	2.040
	SRR5643524	five period of Gastrodia elata	3.990
	SRR5643525	five period of Gastrodia elata	3.590
	SRR5643528	five period of Gastrodia elata	1.980
	SRR5643658	five period of Gastrodia elata	11.110
	SRR5643659	five period of Gastrodia elata	10.500
	SRR5643660	five period of Gastrodia elata	4.930
	SRR5643661	five period of Gastrodia elata	3.070
	SRR5643662	five period of Gastrodia elata	1.880
	SRR5643663	five period of Gastrodia elata	5.910
	SRR5643664	five period of Gastrodia elata	3.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.700
SRP279888	Gastro	Gastrodia elata tuber	8.51
	Juven	Juvenile tuber	0.49
	Mother_Gastro	Mother tuber of Gastrodia elata	0.15
	Mother_Juven	Mother tuber of Juvenile	0.28