Detail information of GWHGAAEX008635/evm.TU.scaffold_2260.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|322436921|ref|YP_004219133.1| | 3.00E-39 | amino acid permease [Granulicella tundricola MP5ACTX9] |
| KOG | KOG1287 | 2.00E-118 | Amino acid transporters |
| nr | gi|743825118|ref|XP_010932955.1| | 2.29E-126 | PREDICTED: probable polyamine transporter At3g13620 [Elaeis guineensis] |
| Swissprot | tr|Q9LHN7|PHSC_ARATH | 6.00E-119 | Probable polyamine transporter At3g13620 |
| trEMBL | tr|I1H528|I1H528_BRADI | 2.00E-121 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G61290.1} |
| TAIR | AT3G13620 | 2.00E-118 | Amino acid permease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00002252 | 553 | 1419 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008635
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 41 | 266 | 7.50E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.620 |
| SRR2545915 | Juvenile tuber | 7.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 53.990 |
| SRR5643514 | five period of Gastrodia elata | 48.680 | |
| SRR5643515 | five period of Gastrodia elata | 30.150 | |
| SRR5643524 | five period of Gastrodia elata | 44.110 | |
| SRR5643525 | five period of Gastrodia elata | 199.310 | |
| SRR5643528 | five period of Gastrodia elata | 210.350 | |
| SRR5643658 | five period of Gastrodia elata | 216.340 | |
| SRR5643659 | five period of Gastrodia elata | 15.120 | |
| SRR5643660 | five period of Gastrodia elata | 6.580 | |
| SRR5643661 | five period of Gastrodia elata | 13.850 | |
| SRR5643662 | five period of Gastrodia elata | 12.540 | |
| SRR5643663 | five period of Gastrodia elata | 14.130 | |
| SRR5643664 | five period of Gastrodia elata | 12.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 61.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 67.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 63.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 67.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 63.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 63.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.70 |
| Juven | Juvenile tuber | 46.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.71 | |
| Mother_Juven | Mother tuber of Juvenile | 79.89 |