Detail information of GWHGAAEX008638/evm.TU.scaffold_227.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294054955|ref|YP_003548613.1| | 2.00E-89 | FGGY-like carbohydrate kinase [Coraliomargarita akajimensis DSM 45221] |
| KOG | KOG2531 | 0 | Sugar (pentulose and hexulose) kinases |
| nr | gi|695022377|ref|XP_009398314.1| | 0 | PREDICTED: xylulose kinase [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0SRC0|M0SRC0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23090_001} |
| TAIR | AT5G49650 | 0 | xylulose kinase-2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000241 | 34092 | 38925 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008638
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00370.20 | FGGY_N | 63 | 218 | 2.70E-15 |
| PF02782.15 | FGGY_C | 230 | 419 | 3.70E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00854 | xylB, XYLB | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0042732 | Biological Process | D-xylose metabolic process |
| GO:0004856 | Molecular Function | xylulokinase activity |
| GO:0016773 | Molecular Function | phosphotransferase activity, alcohol group as acceptor |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.050 |
| SRR2545915 | Juvenile tuber | 17.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.230 |
| SRR5643514 | five period of Gastrodia elata | 36.530 | |
| SRR5643515 | five period of Gastrodia elata | 36.410 | |
| SRR5643524 | five period of Gastrodia elata | 35.030 | |
| SRR5643525 | five period of Gastrodia elata | 74.620 | |
| SRR5643528 | five period of Gastrodia elata | 40.370 | |
| SRR5643658 | five period of Gastrodia elata | 97.310 | |
| SRR5643659 | five period of Gastrodia elata | 44.750 | |
| SRR5643660 | five period of Gastrodia elata | 53.210 | |
| SRR5643661 | five period of Gastrodia elata | 51.650 | |
| SRR5643662 | five period of Gastrodia elata | 46.360 | |
| SRR5643663 | five period of Gastrodia elata | 50.330 | |
| SRR5643664 | five period of Gastrodia elata | 52.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.79 |
| Juven | Juvenile tuber | 34.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.69 | |
| Mother_Juven | Mother tuber of Juvenile | 30.72 |