Detail information of GWHGAAEX008641/evm.TU.scaffold_227.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262194494|ref|YP_003265703.1| | 0 | glycoside hydrolase [Haliangium ochraceum DSM 14365] |
| nr | gi|672124084|ref|XP_008785418.1| | 0 | PREDICTED: lysosomal beta glucosidase-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FGY1|BXL1_ARATH | 2.00E-39 | Beta-D-xylosidase 1 (Precursor) |
| trEMBL | tr|M0T758|M0T758_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P15100_001} |
| TAIR | AT3G47000 | 0 | Glycosyl hydrolase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000241 | 52987 | 105743 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008641
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00933.20 | Glyco_hydro_3 | 36 | 364 | 6.20E-72 |
| PF01915.21 | Glyco_hydro_3_C | 401 | 610 | 2.50E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
| Carbohydrate-Active enzymes Family | GH3 |
| Carbohydrate-Active enzymes Family | GH3 |
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.380 |
| SRR2545915 | Juvenile tuber | 73.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 108.350 |
| SRR5643514 | five period of Gastrodia elata | 155.460 | |
| SRR5643515 | five period of Gastrodia elata | 117.750 | |
| SRR5643524 | five period of Gastrodia elata | 157.920 | |
| SRR5643525 | five period of Gastrodia elata | 90.150 | |
| SRR5643528 | five period of Gastrodia elata | 96.250 | |
| SRR5643658 | five period of Gastrodia elata | 76.970 | |
| SRR5643659 | five period of Gastrodia elata | 69.640 | |
| SRR5643660 | five period of Gastrodia elata | 73.630 | |
| SRR5643661 | five period of Gastrodia elata | 76.220 | |
| SRR5643662 | five period of Gastrodia elata | 73.390 | |
| SRR5643663 | five period of Gastrodia elata | 77.110 | |
| SRR5643664 | five period of Gastrodia elata | 73.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 108.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 132.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 113.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 95.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 88.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 90.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 88.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 87.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 114.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 106.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 139.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 139.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 86.41 |
| Juven | Juvenile tuber | 177.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 81.64 | |
| Mother_Juven | Mother tuber of Juvenile | 157.02 |