Gene detail

Detail information of GWHGAAEX008642/evm.TU.scaffold_227.13

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2217	U4/U6.U5 snRNP associated protein
nr	gi\|743803410\|ref\|XP_010926911.1\|	PREDICTED: SART-1 family protein DOT2 [Elaeis guineensis]
Swissprot	tr\|Q9LFE0\|DOT2_ARATH	SART-1 family protein DOT2 {ECO:0000305}
trEMBL	tr\|D7UD56\|D7UD56_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40671.3}
TAIR	AT5G16780	SART-1 family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000241	107040	142716	-

Transcript Sequence
>GWHTAAEX008642 AGTATTGCAAACCCTCCCTCAGGTCCCTCGCCGAATCTTTCTCTTCCCAGGATCTCCCTTTCAGCACAAGAAGTCGATCGCACCCCCACCTCCTCCCACAAACCGCCGATCTCATTTCCAGATCTCTCCATCATCGGCTGTGTTTTCAGATCAGGAAGAGGTGGTGACTGAGAAGATCGATGGCTCGATCCTCACCTTCCCGATCCACGAACCTCTCCCTTCAGCAAAAGGCTCGCCGACTTTTCCTTTCCCACCGATCCTCTGCTCGAGACGCCGCGCCGACCTTCCATCGACGCCATTAAGCCTCACTTTCATCTCTCAATCAAGGAAACTTATCTATACTCTATGGAAAGTTGAAGGCTTAAAGCTCCTAAATTGGTTACTATAGAGGTTTTGGAGCTGCCCCAGCTATTTTACTTGGCTCAGACCAAATTTGTGAGATTGATATTTGGACCAACTTATCTAAGCCAGTTGTGAGCAGACATCACTATCAAGAGGGCTGCAAATTTTTTTTGATAAAATATTTGATTTGGGGGTTTTAAGTGCTTCATCATGGCAGATGAAGTTCGATCTAGAGAATGGCTGGGTGAGGAGGAAAGTGTAAGAAATAGCTCTTCCAAAAGAGTTGGGAGGAATCAAAGAGGTTATTATCCTGATGAGTTGGGAATAGACAATGAAACAGAGAAATTAAGGGAAATGAGGAAGCGTGATAACAAGGATAGGAAGAAAGAGAGGCGCGAAGAAAAGAACTATGAAGGAAAAGACAAGGAGAGAATAAAACACTGGGAAAAGGAGGATTTTTCTGGTAAAGAAATAGTCAAGCATGGCTCCAGGGAAAGAATGAGCGGCAGTAGAGATAAAAGGAAGGAAAATCAGGAGGATTATGGTAAGTTGAAGGATGAGCTTGAACTGGACAAAGAAAAAGTTAGGGACAAAATTAGGGATAGGGATTTTGATCGAATAAAGCATCGAGATGATAAAGATAACGAAAAAGCAAAAGATAGATTGAAGGAACATGACATGGCCAAAGATATAGATCACGACAGAGATCGGAGCATTGATAAAGAGTTTGAACACAGCCGTGGTCATGGGAAGGATGGAGGAAGGGAGGCAAAATCTAGAGTTAAGGAACGTGACAAGGATAAACATACAGATCATGGTAGAGAACGAAGCATAGAAAGGGAGCGTGATCAAAACCATGATTATGTCAAGGATAAAACTAAGGATGGTGAAAAGGACAAGGGTAAAAGAAAACACAGGGAGAAGGAAGTGGATGTAGTAGCAGACCAAGATAGATCAAAAGGTAGGAATAGAGGAAGGGATAATGATAGAGATAAAGAGGTTGCTGCAGAAGAAAACCTTTTTATCAAGCGTATGGCAGATATTAGTGAGGGCGATGCTCCTAATAATTTTTTTTCTGATGGTCATAGTAAGGCAGTGGGTTGGCAAACTTCTACCGAGCTTAAGGAGCGTTTAAAAAAAATGAGGGAAGATAGAATAAATGGAAATTCAGTGGCTGGGCTTACTAGTAAAGCGATACTTGAGGAGGATTCTGGGATTCTCTCATGGGTCAGCAAAAGTCGGAAGCTTGAGAAGGAGAGGAATGCTGAAAAAGAGAAAGCTATGGCACTTTCAAGGATGCTGGATGAACAGGATAGAATTCTTGATGAAAGTGAAGATGAGTTAACGGTGGATAGCAGCAAGGATTTAGCCGGAATGAAAGTTATTCATGGACTCGATAAAGTAATGGAAGGCAGTACTATTGTTCTGACTCTGAAGGATCAGAATATTCTTGCAGATGGTGACATTAATGAAGATATTGACATGCTTGAAAGCGTGGAGATTGGGGAGCAGAAGCGTAGAGATAAGGCTTATTTGGATGCTAAAAGGAATACCGGAAAGTATGATGACAAGTTCAATGAAGACCTGATTTCTGAGAAAACAATTCTTCCACAATATAATGATTCTATTGATGATGAGGGAGTAACATTAGATGAAAGTGGGGGCTTTACTGGTGAAGCAGAGAAGAAATTGGCTGAATTATGCAAAAGAATAGAAGGCAGTTATTTGAAAAAGGATTATGTGGATCTATCTTTGTCTGGGAAAATTCAGTCAGATTACTTCACTACAGATGAAATGCTTCAATTTAAAAAGCCGAAGAGAAAAAAATCTTTAAGAAAGAAAGCAAAGCTGGATTTGGATGCCCTGGAAGCAGAAGCTCGAGCTGCAGGATTAGGCGTTGGGGACCTTGGTACAAGGGATGATACTAAGAGAGAATCTGCAAGAGAAGAGGAGGAGAAAAGCTTGGCTAAAGCAAGGAGCAACGCTTACCAAACAGCATTAACCAAGGCTGAAGAGGCTTCCAAAATTCTGCGCCAGGAGCAATCTTTGACTTCTAAAGTAGCTCATTATGACAATCCTGTTTTTGGAGAGGATTATGATGACCTCCAGAAATCCATTGAGCAAGCAAGAAAACTTTCCTTAAAGAAATCGGATGAAGCAGCATTTTTTGGTCCTCAGGCAGTTGCCCTTTTAGCTACAGCTTATAAAGAGCAATATGATGTTCAAGGTTCTGCTTTAGGTGACACTAAAGGGAGCAAAGTTGTAATCACAGAGATGGAGGAATTTGTATTGGGTTTGCAAATTAATGAAGAAACAACTAATCTTGTGTCTGGGGACGTTTTTAAAGATGAGGAGGTTGTTCCTAAGCTAATTGGCCATGAACCAAAAGCAGAGATTGGCGGCTGGACAGAAGCAAAGGAAACTGAAATGGTTGAACTGTCCATTAGTGGAGAGAGTGGAGATATTACCCCAGATGAAATAATCCATGAGACTGCAGTTGGAAAAGGGTTGGCAAGTGCACTTAAGCTGCTAAAAAATCGTGGTACATTGAAGGAAAGCATTGATTGGGGTGGTAGAAATATGGATAAAAAGAAAAGTAAATTGGTTGGCATTGATGCTAATGATGGGTCAAAGGAAATTCGCATTGAAAGAACTGATGAGTTTGGTCGAATAATGACGCCAAAGGAGGCATTCAGAATGATTTCTCACAGGTTTCATGGGAAAGGGCCTGGAAAGATGAAACAAGAAAAGCGTATGAAGCAATATCAGGAAGATCTAAAAACAAAACAAATGAAAGCGTCTGACACACCATTATTAGCAATGGAGAAAATGAGAGAGGCTCAATCTAGACTGAAGATGCCTTACCTTGTGCTCAGTGGACACGTGAAGCCTGGCCAGAGCAGTGATCCCACAAGTGGATTTGCTACTGTGGAGAAAGACAATCCGGGGAGCTTGACTCCAATGCTTGGAGACAAAAAGGTTGAGCATTTCCTTGGCATAAGGAGCAAGCCAGACTCTGGCAGAATGGGCCCTCCACCTCCAAAGAAACCCAAGATCTAATTCGACGTTGATGCATCCGCAGCTTCTGAACCAGCTCTTGCTAAAATATTTTTGAGCCTTCTTATTTTTACTTTTCCAGTTCGACCACTAATTAATTAGTTGCATGTACCTATGTATATATATTGATATATTCAGTAGCGGTAGCTGCAGCAGTACATTTTCTCTCTCTCTCTCTCTCTCT

Network for GWHGAAEX008642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03343.12	SART-1	299	790	9.20E-55
PF03343.12	SART-1	809	854	2.00E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11984	SART1, HAF, SNU66	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000398	Biological Process	mRNA splicing, via spliceosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	88.650
SRP064423	SRR2545915	Juvenile tuber	88.310
SRP108465	SRR5643513	five period of Gastrodia elata	82.440
	SRR5643514	five period of Gastrodia elata	68.890
	SRR5643515	five period of Gastrodia elata	76.600
	SRR5643524	five period of Gastrodia elata	72.550
	SRR5643525	five period of Gastrodia elata	80.060
	SRR5643528	five period of Gastrodia elata	82.130
	SRR5643658	five period of Gastrodia elata	78.430
	SRR5643659	five period of Gastrodia elata	72.860
	SRR5643660	five period of Gastrodia elata	67.650
	SRR5643661	five period of Gastrodia elata	66.240
	SRR5643662	five period of Gastrodia elata	68.480
	SRR5643663	five period of Gastrodia elata	68.740
	SRR5643664	five period of Gastrodia elata	68.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	68.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	81.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	79.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	85.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	77.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	82.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	65.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	68.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.440
SRP279888	Gastro	Gastrodia elata tuber	58.19
	Juven	Juvenile tuber	83.57
	Mother_Gastro	Mother tuber of Gastrodia elata	62.10
	Mother_Juven	Mother tuber of Juvenile	82.66