Detail information of GWHGAAEX008644/evm.TU.scaffold_227.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434406443|ref|YP_007149328.1| | 2.00E-32 | alkylated DNA repair protein [Cylindrospermum stagnale PCC 7417] |
| KOG | KOG4176 | 1.00E-109 | Uncharacterized conserved protein |
| nr | gi|672156576|ref|XP_008797982.1| | 6.48E-167 | PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|D7TFE1|D7TFE1_VITVI | 1.00E-149 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI29214.3} |
| TAIR | AT1G31600 | 1.00E-109 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000241 | 221377 | 281631 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008644
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13532.5 | 2OG-FeII_Oxy_2 | 162 | 329 | 5.00E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.390 |
| SRR2545915 | Juvenile tuber | 3.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.520 |
| SRR5643514 | five period of Gastrodia elata | 10.850 | |
| SRR5643515 | five period of Gastrodia elata | 10.310 | |
| SRR5643524 | five period of Gastrodia elata | 10.730 | |
| SRR5643525 | five period of Gastrodia elata | 10.750 | |
| SRR5643528 | five period of Gastrodia elata | 13.490 | |
| SRR5643658 | five period of Gastrodia elata | 13.680 | |
| SRR5643659 | five period of Gastrodia elata | 7.500 | |
| SRR5643660 | five period of Gastrodia elata | 6.620 | |
| SRR5643661 | five period of Gastrodia elata | 5.560 | |
| SRR5643662 | five period of Gastrodia elata | 7.260 | |
| SRR5643663 | five period of Gastrodia elata | 5.790 | |
| SRR5643664 | five period of Gastrodia elata | 4.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.97 |
| Juven | Juvenile tuber | 7.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.38 | |
| Mother_Juven | Mother tuber of Juvenile | 5.25 |