Gene detail

Detail information of GWHGAAEX008645/evm.TU.scaffold_227.17

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4836	3.00E-16	Uncharacterized conserved protein
nr	gi\|720010227\|ref\|XP_010259181.1\|	9.01E-116	PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Nelumbo nucifera]
Swissprot	tr\|Q1G3L1\|TIM21_ARATH	9.00E-88	Probable mitochondrial import inner membrane translocase subunit TIM21 (Precursor)
trEMBL	tr\|D7U401\|D7U401_VITVI	7.00E-109	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37470.3}
TAIR	7296981	3.00E-16	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000241	281934	296491	-

Transcript Sequence
>GWHTAAEX008645 ATCATCCAACTCATCTTCATTCAGTGTAAAACCCAACCCTTTGAAATGTCGTTCACTCGTCGTAGAATCGAGAGGCTGTAGGGGCGACGGAAGAGCTAGGTTTCGCAGCCGCGGAGCTGCCGCCTCTTCTTCTTCTCGACGCTGCACCACTCTACAGGTTTCGAAGAACGCTACAGATTCTTCAGCTGACGCTACCATCTGTTTTGTAGATACCGTGCTTCTTTTTCTTGTTCTCTGGGGTAGGGCCTCTCGTGCGACACCGGAAGCGACGAGATTTTTAGCGCCGAAAGTCTCTGTAATTTTTCCCACGCCCCCGACATCAGAATCTAGGCTTTTAAGGCAATGCTCCGATTTAAGAACAAAGTGAGGGAGTTAGGGAATCTGACTCACCATGGAGGTTATTTTTCTGCTGCAAATTTGTCTTCTTTGGGAATAGACTCTGGCCTCTATCCAGAAAGCAGTTGGCTAGTGCACACTTTAAAAAGGGGGGGTGTGATCTCTGGTTATCAAAGTTGGTGCAGTTCTACCACATGTAGAACTTTAAAGGATATAAGAAATACTGACGGTAACTCAGTATTGCTTGTAAGACACATTAATCGGTACATAAGCTCAATCTCTTCAAAGCAGTTCAATATGAACTATTCTAAGCATTATATGCTTCCTCATTTTTCCAGACCACTTTCATCTAAATTCTCTTCACAATCATCGCAGCAGGTAAAAGAGGAATCCAGGAAAGATATTTCTACTATTGAAGATCCATTTGATGATGCTCCTACATACAACATTCCTGAGAAACCGGTGACATTTGTCGAAGGTGCTTCATATAGCGTTATAATTCTTGCGGGTCTGGGAGTTGCTGCCTTGGCTGCTTATGCTGTGTTCAAGGAGCTAATATTTGAGCCAAAAGAGTATAAGGTTTTTGGCAAGGCACTCGAGAGGGTTCAAAATGATAGCCAGGTTCGAGTGAGGATTGGCACCCCAGTGACTGGCTATGGCCAGGAAACGAGAAATCGCGCTGCTCGACAAAGGATTCCGAATAGGATTTGGAAAGATGAAGATGGAGTCGAACATGTCGAGGTAAATTTTTATATAAGAGGGCCTCACGGTGCTGGAAAGGTGTTTGCTGAAATGTTCAGGGATTCAGACAAGCAGTGGAAGTTCACTTTCCTCATCGTGGAAATACTGTCGCCAACACCTGCTCAGCTTATGTTGGAATCCTATGTTCCGGCTTAGCTACTTAGGGTTTCCACAGCATTTTCTCGAAAGAAAATGTCTTAATTTTCTCTGTTGAGGTGGAATTTTGCTTTGATTAAAAAATCTGTTCTTAATTTGTATTTTTATTCATTAGATTATATTTTAGTTTTATGAGAATAGATAGATTTTTTGTATGAATTCAATGCTGTGCGGTAAAAATTTATATGCAATTCAGA

Network for GWHGAAEX008645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08294.10	TIM21	157	280	5.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030150	Biological Process	protein import into mitochondrial matrix
GO:0005744	Cellular Component	mitochondrial inner membrane presequence translocase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.880
SRP064423	SRR2545915	Juvenile tuber	48.410
SRP108465	SRR5643513	five period of Gastrodia elata	40.180
	SRR5643514	five period of Gastrodia elata	40.780
	SRR5643515	five period of Gastrodia elata	34.270
	SRR5643524	five period of Gastrodia elata	37.240
	SRR5643525	five period of Gastrodia elata	23.110
	SRR5643528	five period of Gastrodia elata	19.720
	SRR5643658	five period of Gastrodia elata	17.940
	SRR5643659	five period of Gastrodia elata	47.260
	SRR5643660	five period of Gastrodia elata	48.120
	SRR5643661	five period of Gastrodia elata	50.990
	SRR5643662	five period of Gastrodia elata	45.270
	SRR5643663	five period of Gastrodia elata	48.530
	SRR5643664	five period of Gastrodia elata	50.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.200
SRP279888	Gastro	Gastrodia elata tuber	69.37
	Juven	Juvenile tuber	73.71
	Mother_Gastro	Mother tuber of Gastrodia elata	58.36
	Mother_Juven	Mother tuber of Juvenile	93.49