Detail information of GWHGAAEX008648/evm.TU.scaffold_227.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-28 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672158766|ref|XP_008799127.1| | 0 | PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q0WR59|Y5020_ARATH | 0 | Probable inactive receptor kinase At5g10020 (Precursor) |
| trEMBL | tr|J3LN97|J3LN97_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G25230.1} |
| TAIR | AT2G27060 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000241 | 340342 | 345868 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008648
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 21 | 66 | 2.00E-10 |
| PF13855.5 | LRR_8 | 94 | 152 | 1.50E-06 |
| PF07714.16 | Pkinase_Tyr | 719 | 950 | 1.20E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.830 |
| SRR2545915 | Juvenile tuber | 10.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.180 |
| SRR5643514 | five period of Gastrodia elata | 14.530 | |
| SRR5643515 | five period of Gastrodia elata | 13.810 | |
| SRR5643524 | five period of Gastrodia elata | 11.510 | |
| SRR5643525 | five period of Gastrodia elata | 3.370 | |
| SRR5643528 | five period of Gastrodia elata | 7.720 | |
| SRR5643658 | five period of Gastrodia elata | 6.540 | |
| SRR5643659 | five period of Gastrodia elata | 17.870 | |
| SRR5643660 | five period of Gastrodia elata | 10.440 | |
| SRR5643661 | five period of Gastrodia elata | 12.280 | |
| SRR5643662 | five period of Gastrodia elata | 11.270 | |
| SRR5643663 | five period of Gastrodia elata | 15.950 | |
| SRR5643664 | five period of Gastrodia elata | 15.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.00 |
| Juven | Juvenile tuber | 8.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.11 | |
| Mother_Juven | Mother tuber of Juvenile | 2.38 |