Detail information of GWHGAAEX008652/evm.TU.scaffold_227.26


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428226309|ref|YP_007110406.1|1.00E-159Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase [Geitlerinema sp. PCC 7407]
nrgi|743886421|ref|XP_010910140.1|0PREDICTED: magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q5EFU4|CRD1_HORVU0Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (Precursor)
trEMBLtr|A5BKI4|A5BKI4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN79041.1}
TAIRAT3G569400dicarboxylate diiron protein, putative (Crd1)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000241406320417233+
Transcript Sequence

Network for GWHGAAEX008652

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02915.16Rubrerythrin1332661.30E-41
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K04035E1.14.13.81, acsF, chlE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0015979Biological Processphotosynthesis
GO:0055114Biological Processoxidation-reduction process
GO:0046872Molecular Functionmetal ion binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0048529Molecular Functionmagnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.580
SRR2545915Juvenile tuber26.310
SRP108465SRR5643513five period of Gastrodia elata31.860
SRR5643514five period of Gastrodia elata26.590
SRR5643515five period of Gastrodia elata23.440
SRR5643524five period of Gastrodia elata26.870
SRR5643525five period of Gastrodia elata27.200
SRR5643528five period of Gastrodia elata21.790
SRR5643658five period of Gastrodia elata27.780
SRR5643659five period of Gastrodia elata26.270
SRR5643660five period of Gastrodia elata24.300
SRR5643661five period of Gastrodia elata24.530
SRR5643662five period of Gastrodia elata24.490
SRR5643663five period of Gastrodia elata23.740
SRR5643664five period of Gastrodia elata25.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.040
SRR6049655Rhizomagastrodiae_C368-T10_good_118.270
SRR6049656Rhizomagastrodiae_C368-T07_good_121.840
SRR6049657Rhizomagastrodiae_C368-T07_good_124.050
SRR6049658Rhizomagastrodiae_C368-T04_good_114.660
SRR6049659Rhizomagastrodiae_C368-T04_good_116.920
SRR6049660Rhizomagastrodiae_C368-T01_good_115.130
SRR6049661Rhizomagastrodiae_C368-T04_good_121.620
SRR6049662Rhizomagastrodiae_C368-T01_good_117.240
SRR6049663Rhizomagastrodiae_C368-T01_good_110.730
SRR6049664Rhizomagastrodiae_C368-T10_good_124.900
SRR6049665Rhizomagastrodiae_C368-T10_good_124.900
SRP279888GastroGastrodia elata tuber 21.70
JuvenJuvenile tuber26.87
Mother_GastroMother tuber of Gastrodia elata 13.54
Mother_JuvenMother tuber of Juvenile 18.14