Detail information of GWHGAAEX008655/evm.TU.scaffold_227.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16168.00E-85Protein involved in Snf1 protein kinase complex assembly
nrgi|695052339|ref|XP_009414222.1|4.14E-109PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q84VQ1|KINB1_ARATH2.00E-85SNF1-related protein kinase regulatory subunit beta-1
trEMBLtr|M0TSG3|M0TSG3_MUSAM2.00E-109Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P21600_001}
TAIRAT5G211708.00E-855'-AMP-activated protein kinase beta-2 subunit protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000241465976474219+
Transcript Sequence

Network for GWHGAAEX008655

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16561.4AMPK1_CBM931731.20E-26
PF04739.14AMPKBI2052723.60E-17
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48

KEGG pathway

KO Enzyme pathway mapID
K07199PRKAB Apelin signaling pathway map04371
FoxO signaling pathwaymap04068
AMPK signaling pathwaymap04152
Tight junctionmap04530
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922
Adipocytokine signaling pathwaymap04920
Oxytocin signaling pathwaymap04921
Longevity regulating pathwaymap04211
Longevity regulating pathway - multiple speciesmap04213
Circadian rhythmmap04710
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.990
SRR2545915Juvenile tuber5.920
SRP108465SRR5643513five period of Gastrodia elata20.480
SRR5643514five period of Gastrodia elata16.850
SRR5643515five period of Gastrodia elata21.320
SRR5643524five period of Gastrodia elata18.470
SRR5643525five period of Gastrodia elata30.760
SRR5643528five period of Gastrodia elata21.320
SRR5643658five period of Gastrodia elata29.680
SRR5643659five period of Gastrodia elata21.810
SRR5643660five period of Gastrodia elata22.640
SRR5643661five period of Gastrodia elata20.590
SRR5643662five period of Gastrodia elata24.200
SRR5643663five period of Gastrodia elata19.270
SRR5643664five period of Gastrodia elata23.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.900
SRR6049655Rhizomagastrodiae_C368-T10_good_123.870
SRR6049656Rhizomagastrodiae_C368-T07_good_123.820
SRR6049657Rhizomagastrodiae_C368-T07_good_124.130
SRR6049658Rhizomagastrodiae_C368-T04_good_125.140
SRR6049659Rhizomagastrodiae_C368-T04_good_131.040
SRR6049660Rhizomagastrodiae_C368-T01_good_124.890
SRR6049661Rhizomagastrodiae_C368-T04_good_126.790
SRR6049662Rhizomagastrodiae_C368-T01_good_125.650
SRR6049663Rhizomagastrodiae_C368-T01_good_125.810
SRR6049664Rhizomagastrodiae_C368-T10_good_124.770
SRR6049665Rhizomagastrodiae_C368-T10_good_124.770
SRP279888GastroGastrodia elata tuber 12.67
JuvenJuvenile tuber15.55
Mother_GastroMother tuber of Gastrodia elata 35.65
Mother_JuvenMother tuber of Juvenile 21.30