Detail information of GWHGAAEX008658/evm.TU.scaffold_227.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434398749|ref|YP_007132753.1|4.00E-30Exonuclease RNase T and DNA polymerase III [Stanieria cyanosphaera PCC 7437]
KOGKOG05427.00E-47Predicted exonuclease
nrgi|743786106|ref|XP_010922083.1|6.10E-180PREDICTED: ERI1 exoribonuclease 2-like [Elaeis guineensis]
Swissprottr|Q8W566|Y3514_ARATH1.00E-18Uncharacterized exonuclease domain-containing protein At3g15140
trEMBLtr|Q5NAC0|Q5NAC0_ORYSJ3.00E-172cDNA clone:J033126F02, full insert sequence {ECO:0000313|EMBL:BAG96033.1}
TAIR72913637.00E-47Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000241487170518681-
Transcript Sequence

Network for GWHGAAEX008658

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.23RNase_T1403114.60E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms135.390
SRR2545915Juvenile tuber125.060
SRP108465SRR5643513five period of Gastrodia elata124.920
SRR5643514five period of Gastrodia elata104.650
SRR5643515five period of Gastrodia elata100.280
SRR5643524five period of Gastrodia elata104.190
SRR5643525five period of Gastrodia elata139.520
SRR5643528five period of Gastrodia elata129.540
SRR5643658five period of Gastrodia elata119.640
SRR5643659five period of Gastrodia elata120.150
SRR5643660five period of Gastrodia elata139.870
SRR5643661five period of Gastrodia elata126.380
SRR5643662five period of Gastrodia elata121.030
SRR5643663five period of Gastrodia elata118.460
SRR5643664five period of Gastrodia elata122.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1130.350
SRR6049655Rhizomagastrodiae_C368-T10_good_1142.190
SRR6049656Rhizomagastrodiae_C368-T07_good_1107.530
SRR6049657Rhizomagastrodiae_C368-T07_good_1140.620
SRR6049658Rhizomagastrodiae_C368-T04_good_1136.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1161.690
SRR6049660Rhizomagastrodiae_C368-T01_good_1127.090
SRR6049661Rhizomagastrodiae_C368-T04_good_1114.660
SRR6049662Rhizomagastrodiae_C368-T01_good_189.730
SRR6049663Rhizomagastrodiae_C368-T01_good_1107.260
SRR6049664Rhizomagastrodiae_C368-T10_good_1127.090
SRR6049665Rhizomagastrodiae_C368-T10_good_1127.090
SRP279888GastroGastrodia elata tuber 135.00
JuvenJuvenile tuber175.73
Mother_GastroMother tuber of Gastrodia elata 121.36
Mother_JuvenMother tuber of Juvenile 149.12