Gene detail

Detail information of GWHGAAEX008661/evm.TU.scaffold_227.36

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1927	0	R-kappa-B and related transcription factors
nr	gi\|743781113\|ref\|XP_010920767.1\|	0	PREDICTED: uncharacterized protein LOC105044531 [Elaeis guineensis]
trEMBL	tr\|M0S998\|M0S998_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P19070_001}
trEMBL	tr\|M0S998\|M0S998_MUSAM	6.00E-49	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P19070_001}
TAIR	AT3G45830	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000241	536978	540638	-

Transcript Sequence
>GWHTAAEX008661 CTGCAGTATCGATTGGACGGTTTGTTGAAGCGCCATGGCAATTGTCAGGAATGGCGTTAGGGTTTCGAGTCTGTATGGAGATTTCTGCCGCTGCGAGGCTTCGGACGAGAGCTCTGCCTCGCTGGAATTAGTCGGCGGCAGCTTTTCATCCGATGTGGATTCCGGCATGGCCTCTGACGACGTCGATTTAACGGAGATCGGGGAATACGGGACGGAGCTCTGCCAGGTCGACGACCAGAGCTTTCCCTTCTCGCAGGACCTCTACGATCTTCCCAACCTCGGATCGGTCCTCTCTCTGGAAACCTGGAACGAGTGCTTGACCGAGGATGAGCGATTCGCACTTGCCGAATACCTCCCCGACATGGATCAGGAGACCTTTGCGCTGACGCTCATAGAGCTTCTCTCCGGTAATAATTTCCAGTTTGGGAGCCCTCTTGCTCACCTTTTTAATCAGTTGAAGACCGGGTTCTACGATCCGACTGTCGTTCTTTATCGCAGAGGGCTGAATATATTCCGGCGAATCCAGTACTATCATCACTTGTCAGAGTATCAGAATTCCATGGTCAGGAACCTCGTGCGTAAAAGGAATGCAGTTGAAGACGGGCTGCAAATTCGGAAGAGCTCTGGGACTTGCTCTGATAACAGTGACTCTGCTTTTGCTCTGAGGAAGGTTAAAGCCAAGGGAATTTTGAAAGCCATTAGAGGCTCAGGTTATTCAATGGCTGGGCAAGGTTCACTTCATGGAACTGCAATAAGAAAACCCAACTCTTCGAAATTTAAAAGAAAGGATTCCGTGAAGAGATTTGGCGAGGAAGATGCTAATGAGTATGCCTGGAGGTCTCATCTCCATGGCAGCGAGAAGGTCTCAGATCAGGCAGGTACTACTGCTTCCTATGATTTTGCTGCGTTAAATAGACAGATAAAGGCGAAGCAATCCGAGAAGAAACGTAACTATTCTGCCAAAGAGTGCTTTGAGCATAAACAGAACAAAATACCTCAGTTTCACTGTTTTGATTCTAAAGTAACTGGTAGGCATGGAAAAGTGCATGAAGAAACTCATACATTTAATGACTCAAATATAAGAGGCAAGAAGTGTAAGGCCAAAAATGATTCTAGAACCAGCAAAAGTAGGTTTGTTTCTTATCCACTTGAGAGGGCTCACTCTGATTATAAACTCAATAATTTGTCAAGTGAACTCAGAAGAAAGCTTTCTCATCTTGAAGGAGCTGTCCTGAAATGCTCAAGGAAAAATCCTAGTTTTGATCAAAGTGAGGACACACACTCTGATTCATCAGGCAAGGTTGGGGAAGGCAGGGACATGCATTCCTATGCAAGCAAATCTGAGTATTTTACTGAAGCATTGAAGGGGCATCAGTCTGGAATTAAATTGTATCATGGCGGTAAATTGTCAAGCAGACAGAGTAGATCGAGTATAAAAGTTTCTCATTTACCTGATGGAGGAGGCATAGGTGACCAAACGCTGGAAGTGGGATCTTACTATCCAAAAGTTAACAAGAAAGGTAAAACAAATGATACCAGTTACCCGGATGATAGCATTTCAACAAGAAAGAAAGAGGTATCACATTTTAGAGAAAAGTTGCAGCCTGCCTTACTTGGTTCTTGTGCAAATAGTAAAAGAGAAGTGTCAAATGATTTGCATCATTCCTCACAAGCAACTGACTTGTGTAACCATGTAAGAGGCATTACAAGTAAAGCTGAGGTGCCTTTTGATTTAAATATGAAAAGATTAAACAATAAATCTGAAAACAGAAGTCAAATCTTTTCTGATTGTTCTTTGGAAGATGGTAATCATGATAGATCAGGAACGCCCATTCAGGGGTGCAATTTTCAGCCAAAGATGAGGAAAGTTAATAGTGGAGATGCATATCTTGCTCGGTTGGATGAACCAATTCATAGGCAGTCTAGTCAAAAGAGGGAGATTGAAGGCTCTTCTTATAATAAGAAGAAGAAAAGGAAAGGAAATGCTGGCATTGATGTTCTCAATTCATCTGTTGTAGTTTCTGAATCAACCATTCTTGAGACAGGAGGATCCGATTTGAAGAAGGGTACACAGATTTACAAGGAGCCATTTACTCTGATCACACCAACTATTCATACAGGGTTTTCATTCTCCATTATACATCTCCTTTCAGCTGTTAGGAAAGTTTTGATCACTGCACAGTTGGAAGATGCTGAAGATATTTGCAATCTTTTCAAGAAGGATGGCATAAGCATGCTTGCAAAGGGAGGTGAGCAGGGGAAGCTCTTTCATATGGCAAACGGCACATCTATGCCTCAGCCTCTTGTCCATGTGGATGGCAATATTGTAGGGCAAGATGGAGACCCGAATAATTTGCCATATCTTAGAATTCAGGAGATTGTTCATAGAGTCATGTCGAACCCCGGCGATCCTTGTATTCTTGAAACTTCAGAACGACTTCCGGATTTGGTCAGGGGGGTACTGAAGATATTTTCTTCCAAGACAGCACCATTGGGAGCCAAGGGTTGGAGACCACTCGTTCTGTATGAAAAATCAATCAAAAGCTGGCATTGGGTTGCCCCAGTGTCTTCTAATTCCTCTGACAATGAAGAAGAAACTTCTGCTGAGGCATGGGGCATTCCACACAAGGTGTTGGTGAAACTGGTTGATGCTTTTGCTAATTGGCTAAAAAGTAGTCAGGAAACCCTTCAGCAGATAGGAACTCTTCCTATGCCACCTACAATGGTACCTGTCATGGATTATAAGGATAGATTCAGAGACCTCAGAGCTCAGAAGAGCCTAAACACTATCAATCCAAGTTCGGAAGAAGTGAGAGCTTATTTTCATAAAGAGGAGCTCCTGAGATACTCAATCCCGGACAGGGCTTTCCAATACACTGCTTACGACGGAAAAAAATCGGTCGTAGCACCCCTAAGAAGGGGTGGAGGCAAGCCAACATCAAAAGCACGCGATCATTATATGCTCAAACCAGATCGTCCTCCTCATGTCACCGTTCTTTGCCTTGTAAGAGATGCGGCTGCCCGGTTGCCGGGAAGTATCGGAACCAGAGCAGATGTTTGCACTCTAATAAGAGATTCGCAGTTTATTGTTGAAGATGTCACTGATGCACAAGTTAACCAAGTTGTCAGTGGGGCTTTAGATAGGTTGCATTATGAGCGTGACCCTTGTGTGCAGTTTCAGGGAGAGAGAAAATTGTGGGTTTATCTTCATGGGGACAGGGAGGAGGAAGATTTTGAGGATGATGGTACATCGTCCACAAAAAAATGGAAAAGGCAGAGGAAAGATGCTGCAGAACCCTTTGAAATAGAAACCGCAAATGATTCGAACTATCTTGTCATGGGAGAACCAACAGCAGGCAGTTCTGCCTGTGAGTTCAATACAAATCTTAACATTGATTCATCAAATGCTAGCATGGATGAGAAGGGTGAGATGCTGTGCAGTGATTCAAGACCTAAGTCTTATGTCAAGTCTGCACATTGTATAAGAGAAAGCAAAATGCTTTGTCAACATAACTCCACAAACCAAGATTTTGATGCTGAAACTTTCAGCAGAGAGAGGCCAGTTGGACTTTTGAGTAAATAA

Network for GWHGAAEX008661

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX008661
MAIVRNGVRVSSLYGDFCRCEASDESSASLELVGGSFSSDVDSGMASDDVDLTEIGEYGTELCQVDDQSFPFSQDLYDLPNLGSVLSLETWNECLTEDERFALAEYLPDMDQETFALTLIELLSGNNFQFGSPLAHLFNQLKTGFYDPTVVLYRRGLNIFRRIQYYHHLSEYQNSMVRNLVRKRNAVEDGLQIRKSSGTCSDNSDSAFALRKVKAKGILKAIRGSGYSMAGQGSLHGTAIRKPNSSKFKRKDSVKRFGEEDANEYAWRSHLHGSEKVSDQAGTTASYDFAALNRQIKAKQSEKKRNYSAKECFEHKQNKIPQFHCFDSKVTGRHGKVHEETHTFNDSNIRGKKCKAKNDSRTSKSRFVSYPLERAHSDYKLNNLSSELRRKLSHLEGAVLKCSRKNPSFDQSEDTHSDSSGKVGEGRDMHSYASKSEYFTEALKGHQSGIKLYHGGKLSSRQSRSSIKVSHLPDGGGIGDQTLEVGSYYPKVNKKGKTNDTSYPDDSISTRKKEVSHFREKLQPALLGSCANSKREVSNDLHHSSQATDLCNHVRGITSKAEVPFDLNMKRLNNKSENRSQIFSDCSLEDGNHDRSGTPIQGCNFQPKMRKVNSGDAYLARLDEPIHRQSSQKREIEGSSYNKKKKRKGNAGIDVLNSSVVVSESTILETGGSDLKKGTQIYKEPFTLITPTIHTGFSFSIIHLLSAVRKVLITAQLEDAEDICNLFKKDGISMLAKGGEQGKLFHMANGTSMPQPLVHVDGNIVGQDGDPNNLPYLRIQEIVHRVMSNPGDPCILETSERLPDLVRGVLKIFSSKTAPLGAKGWRPLVLYEKSIKSWHWVAPVSSNSSDNEEETSAEAWGIPHKVLVKLVDAFANWLKSSQETLQQIGTLPMPPTMVPVMDYKDRFRDLRAQKSLNTINPSSEEVRAYFHKEELLRYSIPDRAFQYTAYDGKKSVVAPLRRGGGKPTSKARDHYMLKPDRPPHVTVLCLVRDAAARLPGSIGTRADVCTLIRDSQFIVEDVTDAQVNQVVSGALDRLHYERDPCVQFQGERKLWVYLHGDREEEDFEDDGTSSTKKWKRQRKDAAEPFEIETANDSNYLVMGEPTAGSSACEFNTNLNIDSSNASMDEKGEMLCSDSRPKSYVKSAHCIRESKMLCQHNSTNQDFDAETFSRERPVGLLSK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.700
SRP064423	SRR2545915	Juvenile tuber	6.290
SRP108465	SRR5643513	five period of Gastrodia elata	4.310
	SRR5643514	five period of Gastrodia elata	4.210
	SRR5643515	five period of Gastrodia elata	5.910
	SRR5643524	five period of Gastrodia elata	5.650
	SRR5643525	five period of Gastrodia elata	7.050
	SRR5643528	five period of Gastrodia elata	4.110
	SRR5643658	five period of Gastrodia elata	6.370
	SRR5643659	five period of Gastrodia elata	5.520
	SRR5643660	five period of Gastrodia elata	8.110
	SRR5643661	five period of Gastrodia elata	6.620
	SRR5643662	five period of Gastrodia elata	5.710
	SRR5643663	five period of Gastrodia elata	7.520
	SRR5643664	five period of Gastrodia elata	6.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.190
SRP279888	Gastro	Gastrodia elata tuber	7.88
	Juven	Juvenile tuber	14.74
	Mother_Gastro	Mother tuber of Gastrodia elata	13.88
	Mother_Juven	Mother tuber of Juvenile	60.77