Gene detail

Detail information of GWHGAAEX008664/evm.TU.scaffold_227.39

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672180629\|ref\|XP_008810512.1\|	1.54E-38	PREDICTED: glycine-rich protein A3-like [Phoenix dactylifera]
Swissprot	tr\|P37705\|GRP3_DAUCA	4.00E-09	Glycine-rich protein A3
trEMBL	tr\|W9T0Y5\|W9T0Y5_9ROSA	5.00E-17	Uncharacterized protein {ECO:0000313\|EMBL:EXC35435.1}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000241	578633	584372	-

Transcript Sequence
>GWHTAAEX008664 CTGTGAACCTCAATTTCCGAATCTCCTAATGGTTAAATTCGGGCCCCCTAAATACAGAAAAAACGTTTTTTGGACGCAAAGCCTATATAAAATCGTTCGTTCCAATTCATCTCTGTTCTTCTATCGGCTTGACATCGCGTTTTTAATCGACTAGAATAATGGGAGGTGGCAAGGACAAGTATGATGGTTCGGACCAACACGACAAGGGATTTATTTCGAATTTGGCTCATGGACTTGCCCCGCATGGCTACCCGCCCCAAGGATACCCGTCCCAAGGATATCCGCCACAGGGCTATCCTCCGCCACCTGGTGCCTACCCTTCGCCACCCGGGGCCTATCCTCCTCAAGGTTACGCTCCGCAGGGATACCCCCCACAAGGGTACCCACCTTCTGGGCATTCCTACAGCGGTCCTTCCGCTCCTCCTCATTCCCAAGGTCATGGATCTCACATGGGCACAATGCTTGCGGGCGGCGCCGCTGCGGCAGCCGCGGGTTATGGGATCCACCACTTGAGCCATGGATCCCAGCACGGGGCCCCTCACGGGGCTCCTTATGGGGGGGCATACCATGCATATGGCCAACATGGCGGTGGCCATCATGGAGGCAAGTTCAAGCATGGCAAGCATGGCAAATTTAAGCATGGCAAGCATGGAAAATTTAAGCATGGCAAGCATGGAATGTTCGGGGGCAAATTCAGGAAGTGGAAGTGATTATTATAAACACTAGTGTAAGCTTTAATCCTATATATACATATATAGGGTGATTTTCTTGCATATAATTATGTACATGTCTGGCTAGTGCTGGATATGTAAAGTATAAAGATTATGCAAGTAAAAATCTCAGAAATAAATACATATGTATTTCTCCTTTTTTTCGTAATAATATTGTCTTGCGAGTACTGGAACTGACTGTTGAAGACTTCCAAAAAATTTAGCTGTGTGTTGTTTTTGAGTTGCTGCTGTTATTTTTATCATATGTATGTTTTAAATCTTTCTAAATACAGAAAAAAAGCTGCTAAAAACTTGATATCATGATTCAGCTCTATTATATAGCAATACATATGGTGAATTAGCATATTTTAAGTGTTAAAATAGAATCTGTGAAATACACA

Network for GWHGAAEX008664

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02162.16	XYPPX	30	44	0.003
PF02162.16	XYPPX	59	73	0.00016
PF02162.16	XYPPX	67	77	0.023

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	184.190
SRP064423	SRR2545915	Juvenile tuber	152.210
SRP108465	SRR5643513	five period of Gastrodia elata	505.190
	SRR5643514	five period of Gastrodia elata	352.160
	SRR5643515	five period of Gastrodia elata	620.320
	SRR5643524	five period of Gastrodia elata	457.340
	SRR5643525	five period of Gastrodia elata	998.780
	SRR5643528	five period of Gastrodia elata	955.930
	SRR5643658	five period of Gastrodia elata	799.490
	SRR5643659	five period of Gastrodia elata	215.580
	SRR5643660	five period of Gastrodia elata	206.430
	SRR5643661	five period of Gastrodia elata	266.280
	SRR5643662	five period of Gastrodia elata	258.460
	SRR5643663	five period of Gastrodia elata	235.040
	SRR5643664	five period of Gastrodia elata	349.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	315.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	256.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	313.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	301.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	292.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	331.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	299.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	280.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	252.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	284.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	459.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	459.980
SRP279888	Gastro	Gastrodia elata tuber	345.77
	Juven	Juvenile tuber	572.41
	Mother_Gastro	Mother tuber of Gastrodia elata	1,205.12
	Mother_Juven	Mother tuber of Juvenile	1,139.39