Detail information of GWHGAAEX008673/evm.TU.scaffold_227.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|596142066|ref|XP_007222508.1|1.71E-07hypothetical protein PRUPE_ppa009800mg [Prunus persica]
Swissprottr|Q764B9|ASB2_ORYSJ3.00E-07Anthranilate synthase beta subunit 2, chloroplastic (Precursor)
trEMBLtr|M5XC59|M5XC59_PRUPE6.00E-08Uncharacterized protein {ECO:0000313|EMBL:EMJ23707.1}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000241732707734049+
Transcript Sequence

Network for GWHGAAEX008673

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01658trpG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380
Phenazine biosynthesismap00405
Quorum sensingmap02024
Biofilm formation - Pseudomonas aeruginosamap02025

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.170
SRR2545915Juvenile tuber0.570
SRP108465SRR5643513five period of Gastrodia elata1.130
SRR5643514five period of Gastrodia elata1.570
SRR5643515five period of Gastrodia elata1.580
SRR5643524five period of Gastrodia elata1.380
SRR5643525five period of Gastrodia elata0.400
SRR5643528five period of Gastrodia elata0.960
SRR5643658five period of Gastrodia elata1.010
SRR5643659five period of Gastrodia elata1.520
SRR5643660five period of Gastrodia elata0.340
SRR5643661five period of Gastrodia elata1.700
SRR5643662five period of Gastrodia elata1.360
SRR5643663five period of Gastrodia elata1.280
SRR5643664five period of Gastrodia elata1.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.000
SRR6049655Rhizomagastrodiae_C368-T10_good_14.880
SRR6049656Rhizomagastrodiae_C368-T07_good_16.040
SRR6049657Rhizomagastrodiae_C368-T07_good_11.960
SRR6049658Rhizomagastrodiae_C368-T04_good_13.320
SRR6049659Rhizomagastrodiae_C368-T04_good_14.730
SRR6049660Rhizomagastrodiae_C368-T01_good_15.230
SRR6049661Rhizomagastrodiae_C368-T04_good_16.420
SRR6049662Rhizomagastrodiae_C368-T01_good_18.520
SRR6049663Rhizomagastrodiae_C368-T01_good_17.260
SRR6049664Rhizomagastrodiae_C368-T10_good_15.230
SRR6049665Rhizomagastrodiae_C368-T10_good_15.230
SRP279888GastroGastrodia elata tuber 3.27
JuvenJuvenile tuber0.65
Mother_GastroMother tuber of Gastrodia elata 1.30
Mother_JuvenMother tuber of Juvenile 0.20