Detail information of GWHGAAEX008675/evm.TU.scaffold_227.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|37520452|ref|NP_923829.1|1.00E-37anthranilate synthase component II [Gloeobacter violaceus PCC 7421]
KOGKOG00264.00E-58Anthranilate synthase, beta chain
nrgi|238014836|gb|ACR38453.1|8.55E-63unknown [Zea mays]
Swissprottr|Q7XUS2|ASB1_ORYSJ2.00E-62Anthranilate synthase beta subunit 1, chloroplastic (Precursor)
trEMBLtr|C4JBA3|C4JBA3_MAIZE3.00E-63Uncharacterized protein {ECO:0000313|EMBL:ACR38453.1, ECO:0000313|EnsemblPlants:GRMZM2G325131_P03}
TAIRAT1G251554.00E-58Glutamine amidotransferase type 1 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000241750693754390+
Transcript Sequence

Network for GWHGAAEX008675

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00117.27GATase11121.40E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01658trpG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380
Phenazine biosynthesismap00405
Quorum sensingmap02024
Biofilm formation - Pseudomonas aeruginosamap02025

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.800
SRR2545915Juvenile tuber24.400
SRP108465SRR5643513five period of Gastrodia elata27.310
SRR5643514five period of Gastrodia elata23.770
SRR5643515five period of Gastrodia elata26.080
SRR5643524five period of Gastrodia elata30.560
SRR5643525five period of Gastrodia elata27.620
SRR5643528five period of Gastrodia elata22.760
SRR5643658five period of Gastrodia elata28.730
SRR5643659five period of Gastrodia elata36.070
SRR5643660five period of Gastrodia elata30.070
SRR5643661five period of Gastrodia elata35.840
SRR5643662five period of Gastrodia elata31.590
SRR5643663five period of Gastrodia elata37.210
SRR5643664five period of Gastrodia elata30.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_156.190
SRR6049655Rhizomagastrodiae_C368-T10_good_188.760
SRR6049656Rhizomagastrodiae_C368-T07_good_170.850
SRR6049657Rhizomagastrodiae_C368-T07_good_147.780
SRR6049658Rhizomagastrodiae_C368-T04_good_151.830
SRR6049659Rhizomagastrodiae_C368-T04_good_131.770
SRR6049660Rhizomagastrodiae_C368-T01_good_169.490
SRR6049661Rhizomagastrodiae_C368-T04_good_184.100
SRR6049662Rhizomagastrodiae_C368-T01_good_1116.930
SRR6049663Rhizomagastrodiae_C368-T01_good_184.580
SRR6049664Rhizomagastrodiae_C368-T10_good_174.990
SRR6049665Rhizomagastrodiae_C368-T10_good_174.990
SRP279888GastroGastrodia elata tuber 60.28
JuvenJuvenile tuber35.82
Mother_GastroMother tuber of Gastrodia elata 37.61
Mother_JuvenMother tuber of Juvenile 21.05