Detail information of GWHGAAEX008676/evm.TU.scaffold_227.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110639481|ref|YP_679690.1| | 2.00E-68 | inorganic pyrophosphatase [Cytophaga hutchinsonii ATCC 33406] |
| KOG | KOG1626 | 2.00E-133 | Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 |
| nr | gi|743780942|ref|XP_010920680.1| | 1.54E-141 | PREDICTED: soluble inorganic pyrophosphatase-like [Elaeis guineensis] |
| Swissprot | tr|Q43187|IPYR_SOLTU | 1.00E-127 | Soluble inorganic pyrophosphatase |
| trEMBL | tr|M0RHY1|M0RHY1_MUSAM | 6.00E-139 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P13550_001} |
| TAIR | AT3G53620 | 2.00E-133 | pyrophosphorylase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000241 | 771547 | 782138 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008676
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00719.18 | Pyrophosphatase | 54 | 205 | 1.30E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01507 | ppa | Oxidative phosphorylation | map00190 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006796 | Biological Process | phosphate-containing compound metabolic process |
| GO:0004427 | Molecular Function | inorganic diphosphatase activity |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.560 |
| SRR2545915 | Juvenile tuber | 38.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 64.560 |
| SRR5643514 | five period of Gastrodia elata | 80.210 | |
| SRR5643515 | five period of Gastrodia elata | 67.360 | |
| SRR5643524 | five period of Gastrodia elata | 69.740 | |
| SRR5643525 | five period of Gastrodia elata | 100.990 | |
| SRR5643528 | five period of Gastrodia elata | 93.430 | |
| SRR5643658 | five period of Gastrodia elata | 120.720 | |
| SRR5643659 | five period of Gastrodia elata | 76.930 | |
| SRR5643660 | five period of Gastrodia elata | 79.530 | |
| SRR5643661 | five period of Gastrodia elata | 48.190 | |
| SRR5643662 | five period of Gastrodia elata | 110.400 | |
| SRR5643663 | five period of Gastrodia elata | 82.780 | |
| SRR5643664 | five period of Gastrodia elata | 65.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 61.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 120.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 68.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 64.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 61.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 100.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 80.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 109.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 109.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 71.21 |
| Juven | Juvenile tuber | 125.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 120.84 | |
| Mother_Juven | Mother tuber of Juvenile | 80.97 |