Gene detail

Detail information of GWHGAAEX008678/evm.TU.scaffold_227.53

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1920	IkappaB kinase complex, IKAP component
nr	gi\|743841966\|ref\|XP_010937674.1\|	PREDICTED: LOW QUALITY PROTEIN: elongator complex protein 1 [Elaeis guineensis]
Swissprot	tr\|Q9FNA4\|ELP1_ARATH	Elongator complex protein 1
trEMBL	tr\|J3MM22\|J3MM22_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB07G24540.1}
TAIR	AT5G13680	IKI3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000241	810352	826459	-

Transcript Sequence
>GWHTAAEX008678 GTTTTGTTAAGAGTTTAGTTTTTTTTCTTAAGTGAGAGCTTCTGCGTGCTCTAGCGGCATCGATCTCTCCCGGCGTTTCTCCACTCGCGCAGAGCGTCCCCGTTGGCTACCTTTCACATATTCTTCATTCCGGTAACAATTAGCGCCATAGTTACCTTGGCCCCTTCTTTTTCACATATCTGTCCAAACTAGGGCTTCCTCACTTCATCTCTCTCATATTCCACTGTCAGTAATCCGGCAAAGATGAAAAACCTCAAGCTTTCTTCATCCCTTTCTTTCGAACTTGGCATACGGTCGGAAGAGGAAATACTTCTTCTTTCGGCTTTCGATATCGAGCACAATCGTCTGTTATTCGCCTCGTCTGCCAACATCGTGTACTCATTCGAGCTTCATTCGTCTCAAAAAGCCAAGGCATGGAACAAATCTCTTATTGCACCCCAGTTTGCTCTGGTTACTCTGGAGCCTGGGGATTTCATATCTGCCATGGATTACTTGATGGAGAAGGAGGCTTTGGTATTGGGAACTTCGATTGGCTACATCATTCTGCATAGTTTGGATGATCCAACAACTGACGTTGTTGGTAGAGTGGAGGGTGGTGTGAAATCCATTGCTTGCAGTCCGGATGGTGCTCTTCTTGCCTTAACTTCTGGAACTGGGCAATTACTTGTTATGTCTCATGAATGGGAAGTATTATATGAATCTTCCCTCAACCCAAAGCATGATGCCCCAGGAGATGTAGATATTTATCCCAGTAATCTTTGCGTCCCAATTTCATGGAGAGGCGATGGGAAGTACTTTGCCACGCTTGGGGGACTTCATGAATGTTCTTTGAAAAGGTTGAGGATTTGGGAGCGTGAATCTGGAATGTTACACTCTGAAACTGAAGCCAAGGATTTCATAGGAGATGTTTTAGATTGGATGCCAAGTGGTGCCAAGGTGACAACCACACTTAATTGCAAGGTTGGTTCAAGCCCTCTTGTAGTTTTTATTGAGAAGAATGGACTTGAACGGAATTCTTTTTGTATAGATGAGCCGGCAGAGATCAGCTGCGTAAAATGGAACTCAAGTTCTGATCTTCTTGCCATTTCTGTGTCATGCGCTCAGCATGATGCTATTAAAATATGGTTTTTCAGTAATAACCATTGGTACTTGAAACAAGAGATAAGATACTTGAAGAGAGAAAGGGCAAAGTTCATGTGGAACCCAACAAAGCCAATGAATCTTATTTGCTGGACTATTCATGGGAGAATCACAACCTACAATTTTGTGTGGATAACCGCTATAACAGAGAGTTCAATTGCATTGGTCATTGACGGTTCCAAGCTACTAATTTCTCCTCTTGTTCTGTCCCTCGTGCCACCTCCCATGTCTCTGTTTGCCTTGAAATTTTCGGCTTCCATTCAGGATGCTGCTTTCCTTTATAACAGTTCAAGAAACCATTTGGCTGCAAGCCTATCAGATGGTAGTTTATGTATTGTGACCCTTCCTGGGATAGATTCCTGGGAGCTTTTTGAGGATAGAGAAATTGTCATTGAAACGTCAAGGTTGGACTTCACATTAGGAACATTTGCACACATCACATGGATCGATTCTCATCGCTTGCTCGGCGTTTCTTGCAACCGAAGTGGTTTGTGCTCAGCATCACATGATGAGAATGAGCTTATTCATTCAAAGGCTAACTGCTCTAATTACCTTTTGTTAGAGATTGAAGTGACATGCTCAGAAGATTCTGCATTTGAACTAGTAAACTCTTCTGGTTGGTATGCTATTCTCTCTAGAAGATTTCCCCTAGAAGAGCCTGTTATTAGTGTTGCTTCAAATCCTTGCAAAAAGGCATTCGCTTTTATTCAGATGGAAGGGGGATATATCTTGGAGTATGAGTCTGGTGTCTGTCTACCTAGAGGACCCCAACTTGGTGAGCTAGATTTTGAATATGGATTTGCAACATCGTGCCCCTGGATGAAAGCAATTACTGTTTGTGACAATGGCATGATGAAGAATTTACTTTTGGGTCTTGACTACAATGGTAACCTGCAAGTTGGGAAGAGAATATTATGCAGCAATTGCAGCAGCTTCACATTATATTCTAGTAGTTGTAATGGTACTGACAGATTCACGCATCTTATTCTGACTACAAAGCAGGATTTTTTGTTCATTGTTAGCATAGATGATATTTTACATGGAAACATAGAAATGAGTTTTGAAGGTTTTAATGACCTGCATAATAGACAAGATAAAAAGAGAGGTTATATTAATATATGGGAGAGGGGCGCAAAATTGATTGGGGCTTTCCATGGAGATGAAGCTGCTGTTATCATACAAGCTCATAGAGGCAGCCTAGAATGTATTCACCCAAGGAAGCTCGTTCTTGTTTCAATAATTAATGCTCTAGTTCAGAGACGTTTTAAAGATGCATTAGTTATGGTGAGGCGGCACAGGATAGACTTAAATTTCATTATTGACTGTTTTGGTTGGCAAATATTTGTAAAATCAGCGGCGTATTTTGTTACTCAAGTAGATAATCTTGCTCATATTACTGAATTTGTTTCATCAATAAAAGTTGAAAATGTCATGGATAATCTGTACAAAGATTACATTTCTCTAACACTACCTGATAAAACTTCTGACGCAAGCGTGAAAAATTCTAGTTCTATAGCAGCTTGTAAGGTTAATTCTGTTTTGCATGCCATACGTAAGGCTCTTGAAGAGCATGCACAACAAAGCCCCGCCAGAGAGCTCTGTATTTTGACAACTTTAGCTCGTAATGAGCCCCCTGCTTTAGAGGAAGCTCTTAACAGAATAAAATATATTCGTGAAATGGAAGTATTGGGTGTCAATGATGCTAACAGGATATTATACCCTTCTGCTGAAGAATCTTTGAAACATCTGCTATGGTTAGCAGATCCTGATGCTGTTTTTGAAACTGCTTTAGGCCTTTATGACCTAAACCTTGCTGCTATTGTTGCATTGAACTCTCTAAAGGATCCTAAAGAATTTCTTCCGTTTCTCAAGGATTTGGAAAATTTACCACCCGTTATCAGGAGATACAAAATTGACCTGAGGTTGCAAAGATACGAGAGTGCACTTAAACATATGTTTTCAGCTGGTGAAGATCATCATGACGAGTGCTTGAATCTCATGAAGAATAACCCAAAGCTTTTTCCACTTGGCCTTCAATTGTTTGAAAAAAATGCTATGAGAAGGGAAGTTTTAGAAGCATGGGGTGACTATTTTCAGAATGAAAAATACTTTCAAGAAGCTGCTTCTGCGTATTTGTGTTGTTCTTCTCATCAGAAGGCCATGAGAGCTTATCGGTGTTGTGGTGATTGGAAAGGTGTGCTCACTGCAGCTTCACTTGTAGGTATAGGTAAACCAGATGTTATTCACCTGGCAAATGAACTTTGTGAAGAATTTCAGGCACTTGGTAAACCTGCTGAGGCTGCCAGGATTTCTTTGGAATATTGTAATGATGTTGGCCGATGTGTCGGGTATTACATCATGGCTCGGGAATGGGAAGAGGCTCTTCGAATTAGTTATATGCATGATAGGGTGGATTTAAAATCTATTGTTGAAGATGCAGCTTTGGAAAGCACAAATTTATTGATTTCTGACTATAAGGAGGCACTTGAAAAGGTTGGAAAGTACTTGGTTCGCTACTTAGCTGTGCGCCAGAGAAGGATAATGCTAGCTGCTAAAATTCAATCTGAAGGAAGATCAACAGAAAATATAGATTATGATAGTGTTTCCGAAACTAGCAGCAGTTTCAGTGAGATGAGTGCATACACCACAAGAACCACGAAGGACTCAATTGCTTCAACAGGCTCAACTACCCGTAGTAAGGCACGGGAATTAAGACACAAAGCAAGCAAAGGAGGAAAGATTCGTGCTGGAAGCCCTGGGGAGGAAATGGCATTGATTGAGCATTTGAAGGCCATGGCTTTTTCTGCCAGCGCTCAACAGGAGCTTAAGTCCTTACTAATGGCTCTTTTGATACTGGGAATGGAGGATGTTGCTCGGCAGCTGCAGATTGCAATTGACATTTTTCAGTTGTCTCAATTTTCGGCAGTTAAACTTGCCGAAGACACGATGTCTACTGACAGTATAGATGAAAAAACACAAAATTTGAACTACTACATTGAACAAGAAAGAGAATCGTGGCAATCACAATCCCATTCTTGGCAGTTCAAAGTATTGATTCCTTAGAAGGTAAAAAAATTCTTGTTCTTAATCCTTTTTACTCAAATTTAATATATTGTGGCATTGGATAGGGGATAACGTGTAATGCAGATGAGATACTTATTTTGAAATGTGATATGCCTGATACAACTATCTCATGTTATTACAATTTGCAGGGCGTGCATTAAAAAATTATCGTCATGAGCAATTGTTTGAATGTTATGTTATTTGAAGTAGATATTGAAGTAGTTTATACTAGCTAGCACAGCCTATTGCTTTATTGTCAAATTTTGTATTATATATAATGATTGTGCTTTGTTTCTTTATTTTCTATTATTATTAAGACTGCACTGAAAAAATAGATTTGTTC

Network for GWHGAAEX008678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04762.11	IKI3	1	159	2.30E-23
PF04762.11	IKI3	174	955	7.40E-189

Protein Sequence

>GWHPAAEX008678
MKNLKLSSSLSFELGIRSEEEILLLSAFDIEHNRLLFASSANIVYSFELHSSQKAKAWNKSLIAPQFALVTLEPGDFISAMDYLMEKEALVLGTSIGYIILHSLDDPTTDVVGRVEGGVKSIACSPDGALLALTSGTGQLLVMSHEWEVLYESSLNPKHDAPGDVDIYPSNLCVPISWRGDGKYFATLGGLHECSLKRLRIWERESGMLHSETEAKDFIGDVLDWMPSGAKVTTTLNCKVGSSPLVVFIEKNGLERNSFCIDEPAEISCVKWNSSSDLLAISVSCAQHDAIKIWFFSNNHWYLKQEIRYLKRERAKFMWNPTKPMNLICWTIHGRITTYNFVWITAITESSIALVIDGSKLLISPLVLSLVPPPMSLFALKFSASIQDAAFLYNSSRNHLAASLSDGSLCIVTLPGIDSWELFEDREIVIETSRLDFTLGTFAHITWIDSHRLLGVSCNRSGLCSASHDENELIHSKANCSNYLLLEIEVTCSEDSAFELVNSSGWYAILSRRFPLEEPVISVASNPCKKAFAFIQMEGGYILEYESGVCLPRGPQLGELDFEYGFATSCPWMKAITVCDNGMMKNLLLGLDYNGNLQVGKRILCSNCSSFTLYSSSCNGTDRFTHLILTTKQDFLFIVSIDDILHGNIEMSFEGFNDLHNRQDKKRGYINIWERGAKLIGAFHGDEAAVIIQAHRGSLECIHPRKLVLVSIINALVQRRFKDALVMVRRHRIDLNFIIDCFGWQIFVKSAAYFVTQVDNLAHITEFVSSIKVENVMDNLYKDYISLTLPDKTSDASVKNSSSIAACKVNSVLHAIRKALEEHAQQSPARELCILTTLARNEPPALEEALNRIKYIREMEVLGVNDANRILYPSAEESLKHLLWLADPDAVFETALGLYDLNLAAIVALNSLKDPKEFLPFLKDLENLPPVIRRYKIDLRLQRYESALKHMFSAGEDHHDECLNLMKNNPKLFPLGLQLFEKNAMRREVLEAWGDYFQNEKYFQEAASAYLCCSSHQKAMRAYRCCGDWKGVLTAASLVGIGKPDVIHLANELCEEFQALGKPAEAARISLEYCNDVGRCVGYYIMAREWEEALRISYMHDRVDLKSIVEDAALESTNLLISDYKEALEKVGKYLVRYLAVRQRRIMLAAKIQSEGRSTENIDYDSVSETSSSFSEMSAYTTRTTKDSIASTGSTTRSKARELRHKASKGGKIRAGSPGEEMALIEHLKAMAFSASAQQELKSLLMALLILGMEDVARQLQIAIDIFQLSQFSAVKLAEDTMSTDSIDEKTQNLNYYIEQERESWQSQSHSWQFKVLIP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0002098	Biological Process	tRNA wobble uridine modification
GO:0005515	Molecular Function	protein binding
GO:0033588	Cellular Component	Elongator holoenzyme complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.800
SRP064423	SRR2545915	Juvenile tuber	9.280
SRP108465	SRR5643513	five period of Gastrodia elata	8.400
	SRR5643514	five period of Gastrodia elata	8.540
	SRR5643515	five period of Gastrodia elata	6.920
	SRR5643524	five period of Gastrodia elata	7.800
	SRR5643525	five period of Gastrodia elata	7.850
	SRR5643528	five period of Gastrodia elata	7.140
	SRR5643658	five period of Gastrodia elata	7.920
	SRR5643659	five period of Gastrodia elata	6.860
	SRR5643660	five period of Gastrodia elata	8.470
	SRR5643661	five period of Gastrodia elata	7.020
	SRR5643662	five period of Gastrodia elata	6.100
	SRR5643663	five period of Gastrodia elata	7.640
	SRR5643664	five period of Gastrodia elata	5.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.840
SRP279888	Gastro	Gastrodia elata tuber	9.14
	Juven	Juvenile tuber	10.24
	Mother_Gastro	Mother tuber of Gastrodia elata	7.01
	Mother_Juven	Mother tuber of Juvenile	8.41