Detail information of GWHGAAEX008679/evm.TU.scaffold_227.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194334049|ref|YP_002015909.1| | 5.00E-10 | RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271] |
| KOG | KOG0533 | 2.00E-70 | RRM motif-containing protein |
| nr | gi|734402627|gb|KHN32110.1| | 1.83E-98 | RNA and export factor-binding protein 2 [Glycine soja] |
| Swissprot | tr|Q8L773|THO4A_ARATH | 6.00E-71 | THO complex subunit 4A |
| trEMBL | tr|I1LK48|I1LK48_SOYBN | 2.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G15040.4} |
| TAIR | AT5G59950 | 2.00E-70 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000241 | 833121 | 854562 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008679
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 89 | 157 | 1.50E-15 |
| PF13865.5 | FoP_duplication | 190 | 242 | 4.50E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12881 | THOC4, ALY | Spliceosome | map03040 |
| RNA transport | map03013 | ||
| mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.760 |
| SRR2545915 | Juvenile tuber | 46.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 59.150 |
| SRR5643514 | five period of Gastrodia elata | 57.910 | |
| SRR5643515 | five period of Gastrodia elata | 59.840 | |
| SRR5643524 | five period of Gastrodia elata | 53.330 | |
| SRR5643525 | five period of Gastrodia elata | 60.210 | |
| SRR5643528 | five period of Gastrodia elata | 67.620 | |
| SRR5643658 | five period of Gastrodia elata | 56.130 | |
| SRR5643659 | five period of Gastrodia elata | 70.530 | |
| SRR5643660 | five period of Gastrodia elata | 68.520 | |
| SRR5643661 | five period of Gastrodia elata | 64.630 | |
| SRR5643662 | five period of Gastrodia elata | 57.040 | |
| SRR5643663 | five period of Gastrodia elata | 52.190 | |
| SRR5643664 | five period of Gastrodia elata | 51.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 71.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 74.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 92.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 65.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 72.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 74.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 72.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 117.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 113.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 104.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 104.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.09 |
| Juven | Juvenile tuber | 48.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 64.64 | |
| Mother_Juven | Mother tuber of Juvenile | 39.43 |