Detail information of GWHGAAEX008692/evm.TU.scaffold_228.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|451948279|ref|YP_007468874.1| | 4.00E-28 | serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523] |
| KOG | KOG0032 | 0 | Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily |
| nr | gi|743828020|ref|XP_010933746.1| | 0 | PREDICTED: CDPK-related kinase 3-like isoform X3 [Elaeis guineensis] |
| Swissprot | tr|Q9ZUZ2|CAMK3_ARATH | 0 | CDPK-related kinase 3 |
| trEMBL | tr|B4FQE5|B4FQE5_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:ACF84338.1, ECO:0000313|EnsemblPlants:GRMZM2G173928_P01} |
| TAIR | AT2G46700 | 0 | CDPK-related kinase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000233 | 65739 | 112109 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008692
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 147 | 409 | 6.00E-70 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CAMK_CDPK |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.210 |
| SRR2545915 | Juvenile tuber | 20.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.770 |
| SRR5643514 | five period of Gastrodia elata | 24.630 | |
| SRR5643515 | five period of Gastrodia elata | 35.910 | |
| SRR5643524 | five period of Gastrodia elata | 34.030 | |
| SRR5643525 | five period of Gastrodia elata | 16.630 | |
| SRR5643528 | five period of Gastrodia elata | 62.490 | |
| SRR5643658 | five period of Gastrodia elata | 27.250 | |
| SRR5643659 | five period of Gastrodia elata | 16.760 | |
| SRR5643660 | five period of Gastrodia elata | 40.350 | |
| SRR5643661 | five period of Gastrodia elata | 42.060 | |
| SRR5643662 | five period of Gastrodia elata | 23.340 | |
| SRR5643663 | five period of Gastrodia elata | 20.160 | |
| SRR5643664 | five period of Gastrodia elata | 22.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.60 |
| Juven | Juvenile tuber | 27.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 118.80 | |
| Mother_Juven | Mother tuber of Juvenile | 158.29 |