Detail information of GWHGAAEX008693/evm.TU.scaffold_228.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0242 | 0 | Kinesin-like protein |
| nr | gi|573940361|ref|XP_006652585.1| | 0 | PREDICTED: kinesin-like protein NACK1-like [Oryza brachyantha] |
| Swissprot | tr|Q8S950|NACK1_TOBAC | 6.00E-148 | Kinesin-like protein NACK1 |
| trEMBL | tr|A0A096UM96|A0A096UM96_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_2BL_657D729B2.2} |
| TAIR | AT4G38950 | 0 | ATP binding microtubule motor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000233 | 151205 | 173636 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008693
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00225.22 | Kinesin | 27 | 340 | 1.50E-92 |
| PF11995.7 | DUF3490 | 739 | 895 | 1.30E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007018 | Biological Process | microtubule-based movement |
| GO:0008017 | Molecular Function | microtubule binding |
| GO:0003777 | Molecular Function | microtubule motor activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.460 |
| SRR2545915 | Juvenile tuber | 0.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.110 |
| SRR5643514 | five period of Gastrodia elata | 1.220 | |
| SRR5643515 | five period of Gastrodia elata | 2.930 | |
| SRR5643524 | five period of Gastrodia elata | 1.040 | |
| SRR5643525 | five period of Gastrodia elata | 0.610 | |
| SRR5643528 | five period of Gastrodia elata | 1.040 | |
| SRR5643658 | five period of Gastrodia elata | 1.220 | |
| SRR5643659 | five period of Gastrodia elata | 0.820 | |
| SRR5643660 | five period of Gastrodia elata | 0.150 | |
| SRR5643661 | five period of Gastrodia elata | 0.910 | |
| SRR5643662 | five period of Gastrodia elata | 1.060 | |
| SRR5643663 | five period of Gastrodia elata | 0.550 | |
| SRR5643664 | five period of Gastrodia elata | 0.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.05 |
| Juven | Juvenile tuber | 0.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.61 | |
| Mother_Juven | Mother tuber of Juvenile | 0.26 |