Detail information of GWHGAAEX008696/evm.TU.scaffold_228.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|383766823|ref|YP_005445804.1|6.00E-542-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase [Phycisphaera mikurensis NBRC 102666]
nrgi|685426906|gb|AIO06388.1|5.25E-1052C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Dendrobium catenatum]
Swissprottr|Q6EPN6|ISPF_ORYSJ1.00E-1002-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (Precursor)
trEMBLtr|A0A088S8D7|A0A088S8D7_9ASPA2.00E-1052C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000313|EMBL:AIO06388.1}
TAIRAT1G639701.00E-97isoprenoid F

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000233185809204986+
Transcript Sequence

Network for GWHGAAEX008696

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02542.15YgbB792321.10E-58
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01770ispF Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0016114Biological Processterpenoid biosynthetic process
GO:0008685Molecular Function2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.790
SRR2545915Juvenile tuber43.650
SRP108465SRR5643513five period of Gastrodia elata78.840
SRR5643514five period of Gastrodia elata100.050
SRR5643515five period of Gastrodia elata82.430
SRR5643524five period of Gastrodia elata99.060
SRR5643525five period of Gastrodia elata47.750
SRR5643528five period of Gastrodia elata47.410
SRR5643658five period of Gastrodia elata52.010
SRR5643659five period of Gastrodia elata37.260
SRR5643660five period of Gastrodia elata37.820
SRR5643661five period of Gastrodia elata51.480
SRR5643662five period of Gastrodia elata73.680
SRR5643663five period of Gastrodia elata61.820
SRR5643664five period of Gastrodia elata65.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_197.260
SRR6049655Rhizomagastrodiae_C368-T10_good_194.770
SRR6049656Rhizomagastrodiae_C368-T07_good_1107.920
SRR6049657Rhizomagastrodiae_C368-T07_good_185.880
SRR6049658Rhizomagastrodiae_C368-T04_good_176.820
SRR6049659Rhizomagastrodiae_C368-T04_good_174.590
SRR6049660Rhizomagastrodiae_C368-T01_good_181.780
SRR6049661Rhizomagastrodiae_C368-T04_good_187.230
SRR6049662Rhizomagastrodiae_C368-T01_good_193.480
SRR6049663Rhizomagastrodiae_C368-T01_good_177.610
SRR6049664Rhizomagastrodiae_C368-T10_good_180.210
SRR6049665Rhizomagastrodiae_C368-T10_good_180.210
SRP279888GastroGastrodia elata tuber 64.86
JuvenJuvenile tuber60.29
Mother_GastroMother tuber of Gastrodia elata 41.07
Mother_JuvenMother tuber of Juvenile 53.53