Detail information of GWHGAAEX008700/evm.TU.scaffold_228.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|150391208|ref|YP_001321257.1|6.00E-566-phosphogluconolactonase [Alkaliphilus metalliredigens QYMF]
KOGKOG31472.00E-1026-phosphogluconolactonase - like protein
nrgi|672197766|ref|XP_008777150.1|1.29E-128PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Phoenix dactylifera]
Swissprottr|Q69NG5|6PGL4_ORYSJ7.00E-120Probable 6-phosphogluconolactonase 4, chloroplastic (Precursor)
trEMBLtr|Q84XU3|Q84XU3_ELAGV2.00E-123Putative 6-phosphogluconolactonase {ECO:0000313|EMBL:AAO26315.1} (Fragment)
TAIRAT5G244002.00E-102NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000233274221296870-
Transcript Sequence

Network for GWHGAAEX008700

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01182.19Glucosamine_iso793109.50E-71
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01057PGLS, pgl, devB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Pentose phosphate pathwaymap00030

Gene Ontology

GO term OntologyName
GO:0006098Biological Processpentose-phosphate shunt
GO:0005975Biological Processcarbohydrate metabolic process
GO:0017057Molecular Function6-phosphogluconolactonase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.960
SRR2545915Juvenile tuber26.480
SRP108465SRR5643513five period of Gastrodia elata63.470
SRR5643514five period of Gastrodia elata68.500
SRR5643515five period of Gastrodia elata58.420
SRR5643524five period of Gastrodia elata65.100
SRR5643525five period of Gastrodia elata51.250
SRR5643528five period of Gastrodia elata68.690
SRR5643658five period of Gastrodia elata42.310
SRR5643659five period of Gastrodia elata53.740
SRR5643660five period of Gastrodia elata52.480
SRR5643661five period of Gastrodia elata61.610
SRR5643662five period of Gastrodia elata44.900
SRR5643663five period of Gastrodia elata40.890
SRR5643664five period of Gastrodia elata43.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_161.760
SRR6049655Rhizomagastrodiae_C368-T10_good_156.580
SRR6049656Rhizomagastrodiae_C368-T07_good_178.460
SRR6049657Rhizomagastrodiae_C368-T07_good_157.370
SRR6049658Rhizomagastrodiae_C368-T04_good_168.340
SRR6049659Rhizomagastrodiae_C368-T04_good_158.780
SRR6049660Rhizomagastrodiae_C368-T01_good_161.310
SRR6049661Rhizomagastrodiae_C368-T04_good_173.130
SRR6049662Rhizomagastrodiae_C368-T01_good_198.990
SRR6049663Rhizomagastrodiae_C368-T01_good_187.170
SRR6049664Rhizomagastrodiae_C368-T10_good_197.120
SRR6049665Rhizomagastrodiae_C368-T10_good_197.120
SRP279888GastroGastrodia elata tuber 61.90
JuvenJuvenile tuber56.05
Mother_GastroMother tuber of Gastrodia elata 55.57
Mother_JuvenMother tuber of Juvenile 34.56