Detail information of GWHGAAEX008702/evm.TU.scaffold_228.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|134103792|ref|YP_001109453.1| | 2.00E-77 | acyl-CoA oxidase [Saccharopolyspora erythraea NRRL 2338] |
| KOG | KOG0136 | 0 | Acyl-CoA oxidase |
| nr | gi|672167983|ref|XP_008803972.1| | 0 | PREDICTED: peroxisomal acyl-coenzyme A oxidase 1-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|O65202|ACOX1_ARATH | 0 | Peroxisomal acyl-coenzyme A oxidase 1 |
| trEMBL | tr|M0TFI4|M0TFI4_MUSAM | 0 | Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168} |
| TAIR | AT2G35690 | 0 | acyl-CoA oxidase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000233 | 559550 | 639505 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008702
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14749.5 | Acyl-CoA_ox_N | 17 | 132 | 1.20E-33 |
| PF02770.18 | Acyl-CoA_dh_M | 134 | 245 | 7.80E-11 |
| PF01756.18 | ACOX | 479 | 655 | 4.00E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006635 | Biological Process | fatty acid beta-oxidation |
| GO:0006631 | Biological Process | fatty acid metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0003997 | Molecular Function | acyl-CoA oxidase activity |
| GO:0005777 | Cellular Component | peroxisome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 80.050 |
| SRR2545915 | Juvenile tuber | 66.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.350 |
| SRR5643514 | five period of Gastrodia elata | 68.060 | |
| SRR5643515 | five period of Gastrodia elata | 52.080 | |
| SRR5643524 | five period of Gastrodia elata | 64.350 | |
| SRR5643525 | five period of Gastrodia elata | 53.980 | |
| SRR5643528 | five period of Gastrodia elata | 81.890 | |
| SRR5643658 | five period of Gastrodia elata | 67.480 | |
| SRR5643659 | five period of Gastrodia elata | 51.150 | |
| SRR5643660 | five period of Gastrodia elata | 62.110 | |
| SRR5643661 | five period of Gastrodia elata | 46.390 | |
| SRR5643662 | five period of Gastrodia elata | 50.330 | |
| SRR5643663 | five period of Gastrodia elata | 56.080 | |
| SRR5643664 | five period of Gastrodia elata | 65.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 83.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 74.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 68.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 101.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 112.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 116.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 93.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 85.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 66.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 78.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 64.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 64.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 76.42 |
| Juven | Juvenile tuber | 76.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 63.12 | |
| Mother_Juven | Mother tuber of Juvenile | 86.29 |