Gene detail

Detail information of GWHGAAEX008708/evm.TU.scaffold_228.24

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|428224291\|ref\|YP_007108388.1\|	membrane protease FtsH catalytic subunit [Geitlerinema sp. PCC 7407]
KOG	KOG0731	AAA+-type ATPase containing the peptidase M41 domain
nr	gi\|703120568\|ref\|XP_010102129.1\|	ATP-dependent zinc metalloprotease FTSH 2 [Morus notabilis]
Swissprot	tr\|O80860\|FTSH2_ARATH	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Precursor)
trEMBL	tr\|W9RHR9\|W9RHR9_9ROSA	ATP-dependent zinc metalloprotease FTSH 2 {ECO:0000313\|EMBL:EXB92379.1}
TAIR	AT2G30950	FtsH extracellular protease family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000233	803546	841069	-

Transcript Sequence
>GWHTAAEX008708 GTGCAGTTGGAAGAGGTTGACATATCCTGAGGTTATCTAAGGAAATCGTGGCGCTGAGTTGCCGCTTAGAGATATAATTTTTATTCATTTAAGAATTTTTATGGAGTAGTATACATATCAAAAAAATTTCTTGTGTACAGCAAGCTCAAATGGTGGTCTCTTCTCCATGCGTCACCTCTAATGTGATGTTTAGAAAGTATGACAAAACAATCATTGCCAAGGAAATATTTGGAATGAATCTGGCATCATCAGCATGCCTTCCTTCCCACAATGTGGTGTTCACTCCTGTTTATATGACTGCCTCTATGAACCAAAATAAACTGTCATCAAGAAGAACGTTTTTTAAGCTCTTACATGGAAATACCAGTCTAGTATTATCTACTCTATTTTCTGCAAAAAATGTTCATTCTGATGATCAAGTTGTATCTACTTCAAAAATGTCATATTCTCGATTTTTGGAGTTTTTGGACAATGATAGGGTAAATAAAGTGGATTTATTTGAGAACGGTACCATAGCAATTGTGGAGACTATCTCGCCTGAGTTTGGCAATAATGTTCAGCGAGTGCGTGTGCAACTTCCAGGTTTACGTCAAGAAATTTTTCAAAAATTAAGGCAGAAAAACATTGATGTTGCAGCTCATAATGATCAGGATGAATCTGGCTCTCTTTTGTTTACTTTAATCGGTAACTTTACATTTCCGCTAGTTCTTATTGCGGGCATATTCTTTTTCTTTAGACGATCGTCTGGTGGTATTGGGGGTTCTAGTGGTCCAGGTTTCCCCCTTGCATTTGGCCAATCCAATGCCAAGTTTCAGATGGAACCCAACACTGGCGTTACTTTTGATGATGTTGCTGGGGTAGATGAAGCAAAGCAGGATTTTATGGAAGTAGTTGAGTTCCTAAAGAAACCTGAAAGGTTTACTGCTGTTGGTGCTCGTATACCTAAAGGCGTTCTTCTCATTGGTCCTCCTGGAACTGGAAAAACTCTGCTTGCCAAGGCGATTGCTGGTGAAGCTGGTGTTCCTTTTTTCTCAATCTCTGGATCTGAGTTTGTGGAGATGTTTGTTGGTGTTGGTGCCTCACGAGTTCGTGATCTTTTCAAAAAAGCTAAAGAAAATGCACCTTGTATTGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAGCGTGGAACTGGCATTGGAGGAGGGAATGATGAAAGAGAACAAACGCTGAACCAGCTCTTAACTGAGATGGATGGTTTTGAAGGAAATACTGGTATCATAGTTATTGCTGCTACCAATCGTGCAGACATTCTAGATTCTGCATTGCTAAGGCCTGGAAGGTTTGATAGACAGGTAACTGTTGATGTGCCAGATGTAAAAGGGCGCACAGATATATTGAAGGTGCATGCTGGTAATAAGAAGTTTGATGGTGATGTTTCTTTAGATGTTATTGCTATGAGAACACCTGGTTTTAGTGGAGCAGACCTTGCAAATCTTCTTAATGAAGCTGCAATTTTGGCTGGTCGCCGAGGGAAGACAGCCATTTCATCTAAAGAGATAGATGATTCCATTGACAGGGTTGTAGCTGGAATGGAAGGAACTGTTATGACAGATGGTAAAAGTAAATGCTTGGTGGCATACCATGAAGTTGGGCATGCAATATGCGGAACATTAACTCCGGGACATGATGCGGTTCAGAAAGTAACCTTAATTCCTCGCGGCCAAGCACGAGGGCTCACTTGGTTTATTCCGGCCGATGATCCAACACTAATCTCAAAGCAACAGCTTTTTGCAAGGATTGTAGGTGGCCTTGGAGGCCGAGCTGCAGAGGAGATTATATTTGGAGAATCTGAGGTGACTACTGGTGCTGCAGGCGATCTGCAGCACATTACTACCTTGGCCAAGCAGATGGTGACGACATTTGGAATGTCTGAGATTGGACCTTGGTCTCTGTTGGACTCCTCAGAGCAGAGCGCCGATGTAATAATGAGGATGATGGCTCGTAATTCGATGTCAGAGAAGCTGGCCGTGGACATTGATGCTTCCGTCAAGAGGATATCTGACCGTGCCTATGAGATTGCTCTGAGCCACATTAGAAACAACCGAGAAGCCGTAGACAAGATCGTGGATGTGCTGCTTGAGAAGGAAACTATGACCGGAGATGAGTTTCGGGCAATCTTATCAGAATTTATCGAATTACCATCCGAGGACAAAGTTCCTCCACCAGCATCAATGTCAGCTGCTGCTGCTACTTGATGTTTCTTTTTTTTCCCTTTTTTAATGCCTTTGGGTGACCAAGATTGTTCTCAGATGGCCTTAAATAAGCTTTAAAGAGTAAGGCCTCGCTTAAATAAGTTTCAACGCATCTAATTGTTCTGCTAAACATTGTATTTAACTATTTTAATGTATCATTGCTCATCATTTCTTATTATTGAAAGGCCTTTCTGAGAAAATTTGTTAAAATTGAATTCAACTATTGAAATTTTGGAGGAAAGAATGAATTGCTTTTAATGAATTTCAAAGTTCAAACTAA

Network for GWHGAAEX008708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	268	399	2.10E-45
PF01434.17	Peptidase_M41	462	671	8.70E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004222	Molecular Function	metalloendopeptidase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.450
SRP064423	SRR2545915	Juvenile tuber	28.760
SRP108465	SRR5643513	five period of Gastrodia elata	37.290
	SRR5643514	five period of Gastrodia elata	41.240
	SRR5643515	five period of Gastrodia elata	33.750
	SRR5643524	five period of Gastrodia elata	37.960
	SRR5643525	five period of Gastrodia elata	53.920
	SRR5643528	five period of Gastrodia elata	51.490
	SRR5643658	five period of Gastrodia elata	66.970
	SRR5643659	five period of Gastrodia elata	34.310
	SRR5643660	five period of Gastrodia elata	32.170
	SRR5643661	five period of Gastrodia elata	27.980
	SRR5643662	five period of Gastrodia elata	32.890
	SRR5643663	five period of Gastrodia elata	36.940
	SRR5643664	five period of Gastrodia elata	33.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.420
SRP279888	Gastro	Gastrodia elata tuber	33.72
	Juven	Juvenile tuber	39.35
	Mother_Gastro	Mother tuber of Gastrodia elata	34.16
	Mother_Juven	Mother tuber of Juvenile	28.43