Detail information of GWHGAAEX008713/evm.TU.scaffold_229.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|209964319|ref|YP_002297234.1|1.00E-168class III aminotransferase [Rhodospirillum centenum SW]
KOGKOG14040Alanine-glyoxylate aminotransferase AGT2
nrgi|695024099|ref|XP_009399251.1|0PREDICTED: probable gamma-aminobutyrate transaminase 3, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprottr|B8BBZ7|GATP3_ORYSI0Probable gamma-aminobutyrate transaminase 3, mitochondrial (Precursor)
trEMBLtr|M0SUG3|M0SUG3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00340_001}
TAIRAT3G222000Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000022525029100017+
Transcript Sequence

Network for GWHGAAEX008713

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.20Aminotran_3714887.60E-91
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K16871POP2 Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Butanoate metabolismmap00650
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0008483Molecular Functiontransaminase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms160.140
SRR2545915Juvenile tuber241.920
SRP108465SRR5643513five period of Gastrodia elata254.320
SRR5643514five period of Gastrodia elata193.230
SRR5643515five period of Gastrodia elata198.950
SRR5643524five period of Gastrodia elata184.590
SRR5643525five period of Gastrodia elata73.720
SRR5643528five period of Gastrodia elata75.210
SRR5643658five period of Gastrodia elata74.200
SRR5643659five period of Gastrodia elata166.790
SRR5643660five period of Gastrodia elata166.070
SRR5643661five period of Gastrodia elata156.980
SRR5643662five period of Gastrodia elata104.780
SRR5643663five period of Gastrodia elata100.970
SRR5643664five period of Gastrodia elata109.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1191.100
SRR6049655Rhizomagastrodiae_C368-T10_good_1202.950
SRR6049656Rhizomagastrodiae_C368-T07_good_1229.110
SRR6049657Rhizomagastrodiae_C368-T07_good_1204.440
SRR6049658Rhizomagastrodiae_C368-T04_good_1148.040
SRR6049659Rhizomagastrodiae_C368-T04_good_1145.050
SRR6049660Rhizomagastrodiae_C368-T01_good_1166.410
SRR6049661Rhizomagastrodiae_C368-T04_good_1203.280
SRR6049662Rhizomagastrodiae_C368-T01_good_1166.930
SRR6049663Rhizomagastrodiae_C368-T01_good_1103.070
SRR6049664Rhizomagastrodiae_C368-T10_good_1218.680
SRR6049665Rhizomagastrodiae_C368-T10_good_1218.680
SRP279888GastroGastrodia elata tuber 108.58
JuvenJuvenile tuber133.66
Mother_GastroMother tuber of Gastrodia elata 57.89
Mother_JuvenMother tuber of Juvenile 108.81