Detail information of GWHGAAEX008716/evm.TU.scaffold_229.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521464512|ref|YP_008151634.1| | 1.00E-21 | hypothetical protein SCE1572_26190 [Sorangium cellulosum So0157-2] |
| nr | gi|743804790|ref|XP_010927278.1| | 0 | PREDICTED: U-box domain-containing protein 52-like [Elaeis guineensis] |
| Swissprot | tr|Q9FKG6|PUB52_ARATH | 5.00E-90 | Serine/threonine-protein kinase |
| trEMBL | tr|M0SVT1|M0SVT1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05020_001} |
| TAIR | AT2G24370 | 1.00E-175 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000225 | 166596 | 174356 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008716
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 360 | 553 | 4.40E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-IXb |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.230 |
| SRR2545915 | Juvenile tuber | 1.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.340 |
| SRR5643514 | five period of Gastrodia elata | 0.400 | |
| SRR5643515 | five period of Gastrodia elata | 0.270 | |
| SRR5643524 | five period of Gastrodia elata | 0.320 | |
| SRR5643525 | five period of Gastrodia elata | 0.280 | |
| SRR5643528 | five period of Gastrodia elata | 0.050 | |
| SRR5643658 | five period of Gastrodia elata | 0.260 | |
| SRR5643659 | five period of Gastrodia elata | 0.160 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.490 | |
| SRR5643662 | five period of Gastrodia elata | 0.090 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.96 |
| Juven | Juvenile tuber | 0.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.53 | |
| Mother_Juven | Mother tuber of Juvenile | 0.12 |