Gene detail

Detail information of GWHGAAEX008723/evm.TU.scaffold_23.2

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672206211\|ref\|XP_008779373.1\|	3.15E-99	PREDICTED: probable pectin methyltransferase QUA2, partial [Phoenix dactylifera]
Swissprot	tr\|Q9C9Q8\|PMTT_ARATH	8.00E-59	Probable pectin methyltransferase QUA2
trEMBL	tr\|M0U9G2\|M0U9G2_MUSAM	2.00E-94	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP15530_001}
TAIR	AT1G78240	3.00E-58	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	8314	10336	-

Transcript Sequence
>GWHTAAEX008723 GGAATTTTTCGAACTGGCAGAGGGACTCGTGAGCACGGCGCGGTGAAACTGTGTTTTGTTCTCTTCTGTTCTTTTCTCGAGCCTTGGGAACAAGTGCTCATGGCATTGGGCCTCTTAATCTATCTGCATCTCGTGAGTGAGGAAGGGGCTTCGATGGCGAGGGATTCTACCTTTTAATCTCATAAAAACTAGCATTCGATTTTGACTTCTTTAACTGGATCTTTTTCCCGATTTTACATTGGGGCGTTTTTAGCTATCAATGTCGAGACCACTTCACCGGGGATCCTCCGGTGGTAATGGAAAGTTCTTCAGCTGTGGAGGCTCGTTTGATAATATCTCTCAACATAAGAATTTGCCTAAGAATGGGTTAGGGCATGAGATTTCAAGCCCTTTTGGAGCAATTAGAAGTCGTCAAAGCTTGAAGTTTAATTTTCTCAAGCTTGGTCTTGCTGTGATCGTTTTCGTTGCGATTTCGGGATCACTATACTGGATGTCATGTATCTCCACTGCCTCGCAGGTGAACTTCTATAGTAGTTACAGGAGGCTTCACGAGGAGCTTGTCGCCGATCTCTCCCTTGTAGAAGAACTCTCCAGTGGAGTTGGAAGGCTCAGAGAGTTTGAATTCTGTACTCTAGAGTATGAGAATTATGTGCCCTGTTATTATAATGTTTCAATGAGTTTAGATATGACAAATGGGCAGATTGAGTTTGAGAGAAAGTGTGTTAGGGGAGTTGAAAAGGAGCAGGGTTGTTTGGTTTTGCCACCAAGGAATTATAGGATTCCTTTGAGATGGCCAACTGGTAGGGACTTCATCTGGAAGGATAATGTGAAGATTACAGGGCAGGAGTTCTCATCAGGGAGCTTGACAAAGAGGATGATGGTAGAGGAAGAACACATTTCTTTTCACTCTGACTCTTTAATGGTGGATGGTGTAGAAGATTATTCCCATCAAATAGCTGAGATGCTTGGCCTGAGGAATGAGTCAAATTTCAATGAGGCTAGGGTAGGTCTCTTCCATTTCAACACTTGTATTTATTTTTTTATTTTAATTTGGCATTGGGGACCAAGGAGCTGAAACAGAAAATTAATAATGAAAATGGGACTTACATTGGTATTTCCTAATCGAGCTTAAGATGATCATATCACTTTTTTTAAAAAAATGATTCCATCATGCTTGACTGTTGGAGAGAACTTATTAATTTAGAGCTTATTGGTGAGTTAATAAATCTATGTTTTTTTTAATTGGAAGAACTATTGGCATGTCATCAGAATCTCTTGGGCATTTACATATGAAACCTAAACAATTAGATATTTATAGAATTCATACATGATCTTATCTTATACATGGAATTATATCAAGTTGTAATAATGCCCAAGAGCTAAGAGAGGTGGTAATTATGGTATATTGATAGGGATTTGAATCATAGTTTTGTGAGCATCAAAGTAAGCCGGGC

Network for GWHGAAEX008723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	129	240	3.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.970
SRP064423	SRR2545915	Juvenile tuber	11.270
SRP108465	SRR5643513	five period of Gastrodia elata	13.420
	SRR5643514	five period of Gastrodia elata	7.140
	SRR5643515	five period of Gastrodia elata	15.000
	SRR5643524	five period of Gastrodia elata	7.350
	SRR5643525	five period of Gastrodia elata	4.020
	SRR5643528	five period of Gastrodia elata	5.160
	SRR5643658	five period of Gastrodia elata	4.750
	SRR5643659	five period of Gastrodia elata	11.390
	SRR5643660	five period of Gastrodia elata	9.920
	SRR5643661	five period of Gastrodia elata	12.580
	SRR5643662	five period of Gastrodia elata	10.370
	SRR5643663	five period of Gastrodia elata	12.320
	SRR5643664	five period of Gastrodia elata	6.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.560
SRP279888	Gastro	Gastrodia elata tuber	5.29
	Juven	Juvenile tuber	6.08
	Mother_Gastro	Mother tuber of Gastrodia elata	1.73
	Mother_Juven	Mother tuber of Juvenile	2.38