Detail information of GWHGAAEX008729/evm.TU.scaffold_23.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|217970211|ref|YP_002355445.1| | 5.00E-17 | serine/threonine protein kinase [Thauera sp. MZ1T] |
| KOG | KOG1187 | 2.00E-65 | Serine/threonine protein kinase |
| nr | gi|672185993|ref|XP_008812970.1| | 1.03E-93 | PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Phoenix dactylifera] |
| Swissprot | tr|Q9SGN7|CCR12_ARATH | 5.00E-66 | Serine/threonine-protein kinase-like protein At1g28390 |
| trEMBL | tr|M0TIU2|M0TIU2_MUSAM | 3.00E-83 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P19050_001} |
| TAIR | AT1G28390 | 2.00E-65 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 213702 | 215251 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008729
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 44 | 297 | 1.90E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_CR4L |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.730 |
| SRR2545915 | Juvenile tuber | 3.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.480 |
| SRR5643514 | five period of Gastrodia elata | 2.320 | |
| SRR5643515 | five period of Gastrodia elata | 2.900 | |
| SRR5643524 | five period of Gastrodia elata | 3.110 | |
| SRR5643525 | five period of Gastrodia elata | 6.170 | |
| SRR5643528 | five period of Gastrodia elata | 8.200 | |
| SRR5643658 | five period of Gastrodia elata | 5.090 | |
| SRR5643659 | five period of Gastrodia elata | 9.970 | |
| SRR5643660 | five period of Gastrodia elata | 7.750 | |
| SRR5643661 | five period of Gastrodia elata | 7.940 | |
| SRR5643662 | five period of Gastrodia elata | 7.410 | |
| SRR5643663 | five period of Gastrodia elata | 7.050 | |
| SRR5643664 | five period of Gastrodia elata | 11.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.24 |
| Juven | Juvenile tuber | 2.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.53 | |
| Mother_Juven | Mother tuber of Juvenile | 4.21 |