Detail information of GWHGAAEX008739/evm.TU.scaffold_23.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 8.00E-50 | Heat shock transcription factor |
| nr | gi|568824433|ref|XP_006466606.1| | 1.08E-56 | PREDICTED: heat shock factor protein HSF24-like [Citrus sinensis] |
| Swissprot | tr|Q67TP9|HSFB1_ORYSJ | 8.00E-58 | Heat stress transcription factor B-1 |
| trEMBL | tr|I1QPJ6|I1QPJ6_ORYGL | 1.00E-57 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA09G0097500.1} |
| TAIR | AT4G36990 | 8.00E-50 | heat shock factor 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 614813 | 616662 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008739
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 6 | 95 | 8.90E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.280 |
| SRR2545915 | Juvenile tuber | 37.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.560 |
| SRR5643514 | five period of Gastrodia elata | 25.590 | |
| SRR5643515 | five period of Gastrodia elata | 44.010 | |
| SRR5643524 | five period of Gastrodia elata | 46.770 | |
| SRR5643525 | five period of Gastrodia elata | 42.340 | |
| SRR5643528 | five period of Gastrodia elata | 160.930 | |
| SRR5643658 | five period of Gastrodia elata | 70.290 | |
| SRR5643659 | five period of Gastrodia elata | 20.210 | |
| SRR5643660 | five period of Gastrodia elata | 7.510 | |
| SRR5643661 | five period of Gastrodia elata | 11.700 | |
| SRR5643662 | five period of Gastrodia elata | 13.250 | |
| SRR5643663 | five period of Gastrodia elata | 6.730 | |
| SRR5643664 | five period of Gastrodia elata | 16.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.66 |
| Juven | Juvenile tuber | 7.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.74 | |
| Mother_Juven | Mother tuber of Juvenile | 13.77 |