Detail information of GWHGAAEX008751/evm.TU.scaffold_23.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220917205|ref|YP_002492509.1| | 3.00E-113 | lipoyl synthase [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG2672 | 0 | Lipoate synthase |
| nr | gi|672117868|ref|XP_008782125.1| | 0 | PREDICTED: lipoyl synthase, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|A2XU53|LIAS_ORYSI | 0 | Lipoyl synthase, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03128} (Precursor) |
| trEMBL | tr|F2DQ61|F2DQ61_HORVD | 0 | Lipoyl synthase, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03128} |
| TAIR | AT2G20860 | 0 | lipoic acid synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 1079540 | 1090165 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008751
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16881.4 | LIAS_N | 75 | 116 | 3.20E-13 |
| PF04055.20 | Radical_SAM | 139 | 301 | 3.30E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03644 | lipA, LIAS, LIP1, LIP5 | Metabolic pathways | map01100 |
| Lipoic acid metabolism | map00785 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009107 | Biological Process | lipoate biosynthetic process |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding |
| GO:0016992 | Molecular Function | lipoate synthase activity |
| GO:0005739 | Cellular Component | mitochondrion |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.380 |
| SRR2545915 | Juvenile tuber | 24.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.590 |
| SRR5643514 | five period of Gastrodia elata | 29.710 | |
| SRR5643515 | five period of Gastrodia elata | 28.520 | |
| SRR5643524 | five period of Gastrodia elata | 30.300 | |
| SRR5643525 | five period of Gastrodia elata | 37.930 | |
| SRR5643528 | five period of Gastrodia elata | 39.740 | |
| SRR5643658 | five period of Gastrodia elata | 48.460 | |
| SRR5643659 | five period of Gastrodia elata | 31.450 | |
| SRR5643660 | five period of Gastrodia elata | 28.750 | |
| SRR5643661 | five period of Gastrodia elata | 31.390 | |
| SRR5643662 | five period of Gastrodia elata | 25.300 | |
| SRR5643663 | five period of Gastrodia elata | 30.770 | |
| SRR5643664 | five period of Gastrodia elata | 23.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.51 |
| Juven | Juvenile tuber | 22.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.01 | |
| Mother_Juven | Mother tuber of Juvenile | 21.92 |