Gene detail

Detail information of GWHGAAEX008753/evm.TU.scaffold_23.40

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0834	1.00E-170	CDK9 kinase-activating protein cyclin T
nr	gi\|743856927\|ref\|XP_010941989.1\|	0	PREDICTED: cyclin-T1-3-like [Elaeis guineensis]
Swissprot	tr\|Q2RAC5\|CCT13_ORYSJ	0	Cyclin-T1-3
trEMBL	tr\|K3Y5G7\|K3Y5G7_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si009455m}
TAIR	AT5G45190	1.00E-170	Cyclin family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	1187754	1240128	-

Transcript Sequence
>GWHTAAEX008753 GCTTGAACTAATCAATGAGCTGGTAAATCTGCTCAGCTCTGCCAGCTAAAGAGCCCAAGCTCCGATTTAGAAGGGTAGGAAAGGTAGGAAATTCAGCTGCTGAGCAGTGTAGAAACATCTGAACCGTCCGTTGCTGTAGATTTTATGTAATCAAAATATCGAAAAACGAGAGCCACCGTTGTTCCCATTCCTTTTTGTCTCCAACTTCAACCCTAAAATCGCAAGACAGCGCTCGTCCCCTTCCTGAATCTCGATTACTGGTCGTCCCACTCACAGAGCCCGATTCTAGCTGGTTTCGCTGGAATTTCTAGCAGGAATCGCAGAGAATTGGGCTTATCTTGAAGATTGGAAGTTTATTTCCATCTACTTATTCTTGCAACTATAACCTCAACTCAACGTCAAGTATTTTATGGCTGGATACTCTCTTGGCGATTCTTCTTTCACTCGAATGGAAAAAACTGGACAACATAATATTTCTCAGGAGGAGCTTCATAATTATGGGGCCAGATGGTATTTTTCAAGAAAAGAAATTGAAGAAAATTCTCCATCAAGGAAGGATGGCATTGATCTTAAGAAGGAGGCGTATTTCCGGAAGACGTATTGCACTTTCTTACAGGATTTGGGCATGAGACTTAAAGTACCACAGGTGACAATTGCTACCGCAATAGTATTTTGTCATCGTTTCTTCCTGCGTCAATCACATTCAAAAAGTGACAGGATGACAATAGCAACTGTGTGCATGTTCCTTGCTGGGAAGGTTGAAGAAACTCCTCGCCCACTAAAGGATGTGATTCTTATTTCTTATGAGATTATTCATAAGAAGGACCCATCTGCTGTCCAGAGAATCAAGCAGAAGGAAGTGTATGAACAGCAAAAGGAATTAGTCTTATTGGGGGAAAGGCTTGTACTTGCCACCCTTGGTTTTGATCTGAACGTCCTTCACCCTTATAAACCGCTCGTAGAAGCCATAAAAAAATTCAAGGTGGCGCAAAATGCCCTAGCTCAAGTGGCCTGGAATTTTGTTAATGACGGTCTGCGGACATCACTGTTCCTGCAGTTCAAGCCCCACCAAATTGCTGCTGGTGCCATTTTTCTCGCCGCCAAATTTCTTAAAGTGAAGCTTCCGTCAGACGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTTACACCGAGGCAGCTTGAAGATGTCAGCAATCAAATGCTGGAGCTCTACGAGCAAAATCGCGCCGCTCAACCACCTCATGGCAATGAAGCTGAGAGTAGCAGTGGTGCCGGAACTGTCAATTCTTCTTTGGCAAAGAGTTTGAATCCGTTAAATACGAAGGAAGGCGCACAACTCTCTATAAACTATTATGCTGGTTCTCAGCAGATACAGAATTGCGGCAATGAATATGCCGAAGAAAGAGACGAATATGCCGAGGGAAGAGATGGAAATCAGGAGTCTGGGCTGCTTGGGCCGGTTTCTCATTTCAGAGAAGCTGCCGCAGAAGGCCAAAGCTTTTCAAAATCATCTTCAGGAGGCGAGAAGAGCGGAAGTGCCGTTGAAGCCATGACAAAGATCGACAAAGACAAAGTAAAAGCGGCTCTGGAGAAGCGGCGGAAGCTCCGAAATGTTGTGTCAAAGAAGAGTGCAATCGTCGACGAGGACGATCTGATTGAACGGGAGCTCGAAAATGGGATTGAATTGGCGGCGGAGGATAAGATGCGGGCGGACGAGAGGGAAAGCTGGCCAAAACCTCTTCATCGGCTCGAGCCGCCGCCACCCGCTTCACAAACAAGGCCGAAGCTACCAAAATCTTTTGGGGCGGATGATGCCATGTTCGACAATCAAATTCCTAATGAAGAGAATGCTGAGGAAGGTGAGTTGTCTTCCCTTGATGAGCATGAGTTCCCTTTTCCCAACAAGCTGCAGCATAGCAGCAATGCTAGAGTTTCGGGCATGAAGAGGAGGCCGGATGAGAAGGGATGGTCTGATTATTCGGAGAGGGATCTCAAAAGGGTGAGATGAGAAAATTGAGTGAAGGATGTCATTACATGTTTGATAGAATACGTTGTATTCGGCACTAAGTTTTCTCATTCCTTTTAAAAGGTGGGCCATTATATATATAACAATAATTCAGGGTTGAGTAATGGAGAAAATATAAGCCATGACTTTACCCACCAAGTATTTGAAAGCCCCATTCTTTTTTCCTTAAATTATCAGATTGATTGATCAGAGGAGAGGCTGTTGGTTCCCGAAGAATTTGAGATGCTTTCTTTGCTCAGAGGGTGAGACCTTTTTATAAGCACTTTTTTTTCATATTCTAGGACATTTTATTTTAGTCGCATATTGTGAGGAAGAGGCATTGACCTCATCATCTCGATTATTTATTGTTTTTTGGGTGTAAAGTGTAGTGATAATCTTCAGATGCCATCAATGGCTTCACATTTCTTGAAGGATGGCCGCTGTTATGAATTGGGACTTGTATTAATGTCATTTTAATTTTAGATTGTACTTTATTCAGCATTCAAATCTGTAAAAAAATATATTTTTTTATGTTTTTTACTTTTAAAAGCTTTTAATTAGGCGTTGGGATGTGATGTGTCTGTATGCAGTCAGCTGTTTAAGATTTGTAATTATTATAATAAGAGCTTTATATGTAGC

Network for GWHGAAEX008753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.22	Cyclin_N	34	175	5.60E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.080
SRP064423	SRR2545915	Juvenile tuber	18.080
SRP108465	SRR5643513	five period of Gastrodia elata	15.840
	SRR5643514	five period of Gastrodia elata	14.290
	SRR5643515	five period of Gastrodia elata	16.340
	SRR5643524	five period of Gastrodia elata	13.990
	SRR5643525	five period of Gastrodia elata	14.460
	SRR5643528	five period of Gastrodia elata	14.630
	SRR5643658	five period of Gastrodia elata	13.600
	SRR5643659	five period of Gastrodia elata	21.800
	SRR5643660	five period of Gastrodia elata	22.200
	SRR5643661	five period of Gastrodia elata	19.010
	SRR5643662	five period of Gastrodia elata	22.970
	SRR5643663	five period of Gastrodia elata	18.100
	SRR5643664	five period of Gastrodia elata	18.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.020
SRP279888	Gastro	Gastrodia elata tuber	18.48
	Juven	Juvenile tuber	17.78
	Mother_Gastro	Mother tuber of Gastrodia elata	16.40
	Mother_Juven	Mother tuber of Juvenile	18.92