Detail information of GWHGAAEX008760/evm.TU.scaffold_23.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-109FOG: PPR repeat
nrgi|672134286|ref|XP_008790794.1|0PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial isoform X1 [Phoenix dactylifera]
Swissprottr|O04659|PP398_ARATH6.00E-110Pentatricopeptide repeat-containing protein At5g27110
trEMBLtr|D7UBJ1|D7UBJ1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI40106.3}
TAIRAT5G271102.00E-109Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002514704621473515-
Transcript Sequence

Network for GWHGAAEX008760

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1121340.021
PF01535.19PPR1411669.40E-05
PF01535.19PPR2092310.0021
PF13041.5PPR_22362833.50E-08
PF13041.5PPR_24404872.60E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.280
SRR2545915Juvenile tuber20.700
SRP108465SRR5643513five period of Gastrodia elata17.170
SRR5643514five period of Gastrodia elata16.940
SRR5643515five period of Gastrodia elata18.610
SRR5643524five period of Gastrodia elata16.580
SRR5643525five period of Gastrodia elata21.010
SRR5643528five period of Gastrodia elata20.730
SRR5643658five period of Gastrodia elata21.560
SRR5643659five period of Gastrodia elata23.290
SRR5643660five period of Gastrodia elata21.360
SRR5643661five period of Gastrodia elata18.080
SRR5643662five period of Gastrodia elata22.590
SRR5643663five period of Gastrodia elata22.710
SRR5643664five period of Gastrodia elata21.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.090
SRR6049655Rhizomagastrodiae_C368-T10_good_112.200
SRR6049656Rhizomagastrodiae_C368-T07_good_116.810
SRR6049657Rhizomagastrodiae_C368-T07_good_119.080
SRR6049658Rhizomagastrodiae_C368-T04_good_121.820
SRR6049659Rhizomagastrodiae_C368-T04_good_121.530
SRR6049660Rhizomagastrodiae_C368-T01_good_123.410
SRR6049661Rhizomagastrodiae_C368-T04_good_118.470
SRR6049662Rhizomagastrodiae_C368-T01_good_117.410
SRR6049663Rhizomagastrodiae_C368-T01_good_118.140
SRR6049664Rhizomagastrodiae_C368-T10_good_117.720
SRR6049665Rhizomagastrodiae_C368-T10_good_117.720
SRP279888GastroGastrodia elata tuber 25.91
JuvenJuvenile tuber26.85
Mother_GastroMother tuber of Gastrodia elata 26.03
Mother_JuvenMother tuber of Juvenile 34.35