Detail information of GWHGAAEX008761/evm.TU.scaffold_23.55_evm.TU.scaffold_23.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|16801084|ref|NP_471352.1| | 4.00E-22 | hypothetical protein lin2018 [Listeria innocua Clip11262] |
| KOG | KOG1536 | 2.00E-132 | Biotin holocarboxylase synthetase/biotin-protein ligase |
| nr | gi|672174062|ref|XP_008807174.1| | 1.47E-159 | PREDICTED: biotin--protein ligase 2-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9SL92|HCS1_ARATH | 3.00E-141 | Biotin--[acetyl-CoA-carboxylase] ligase (Precursor) |
| trEMBL | tr|M0TVT5|M0TVT5_MUSAM | 8.00E-152 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P33330_001} |
| TAIR | AT2G25710 | 2.00E-132 | holocarboxylase synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 1494257 | 1500212 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008761
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module11 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03099.18 | BPL_LplA_LipB | 119 | 245 | 4.80E-27 |
| PF02237.16 | BPL_C | 307 | 362 | 0.00018 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01942 | HLCS | Metabolic pathways | map01100 |
| Biotin metabolism | map00780 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006464 | Biological Process | cellular protein modification process |
| GO:0004077 | Molecular Function | biotin-[acetyl-CoA-carboxylase] ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.550 |
| SRR2545915 | Juvenile tuber | 16.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.870 |
| SRR5643514 | five period of Gastrodia elata | 6.280 | |
| SRR5643515 | five period of Gastrodia elata | 5.930 | |
| SRR5643524 | five period of Gastrodia elata | 8.840 | |
| SRR5643525 | five period of Gastrodia elata | 6.790 | |
| SRR5643528 | five period of Gastrodia elata | 6.530 | |
| SRR5643658 | five period of Gastrodia elata | 6.290 | |
| SRR5643659 | five period of Gastrodia elata | 6.630 | |
| SRR5643660 | five period of Gastrodia elata | 8.310 | |
| SRR5643661 | five period of Gastrodia elata | 7.090 | |
| SRR5643662 | five period of Gastrodia elata | 7.790 | |
| SRR5643663 | five period of Gastrodia elata | 6.520 | |
| SRR5643664 | five period of Gastrodia elata | 5.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 58.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 68.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 74.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 78.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 155.74 |
| Juven | Juvenile tuber | 7.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.04 | |
| Mother_Juven | Mother tuber of Juvenile | 7.99 |