Detail information of GWHGAAEX008763/evm.TU.scaffold_23.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|268316941|ref|YP_003290660.1| | 3.00E-21 | multicopper oxidase type 3 [Rhodothermus marinus DSM 4252] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|672134301|ref|XP_008790802.1| | 0 | PREDICTED: L-ascorbate oxidase-like [Phoenix dactylifera] |
| Swissprot | tr|P14133|ASO_CUCSA | 6.00E-166 | L-ascorbate oxidase (Precursor) |
| trEMBL | tr|M5X9Y5|M5X9Y5_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ15865.1} |
| TAIR | AT4G39830 | 0 | Cupredoxin superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 1580164 | 1582099 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008763
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 8 | 36 | 0.00016 |
| PF00394.21 | Cu-oxidase | 49 | 206 | 4.20E-44 |
| PF07731.13 | Cu-oxidase_2 | 313 | 434 | 1.30E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005576 | Cellular Component | extracellular region |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.520 |
| SRR2545915 | Juvenile tuber | 15.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.270 |
| SRR5643514 | five period of Gastrodia elata | 25.670 | |
| SRR5643515 | five period of Gastrodia elata | 30.880 | |
| SRR5643524 | five period of Gastrodia elata | 31.090 | |
| SRR5643525 | five period of Gastrodia elata | 16.680 | |
| SRR5643528 | five period of Gastrodia elata | 33.010 | |
| SRR5643658 | five period of Gastrodia elata | 11.540 | |
| SRR5643659 | five period of Gastrodia elata | 10.940 | |
| SRR5643660 | five period of Gastrodia elata | 5.910 | |
| SRR5643661 | five period of Gastrodia elata | 7.520 | |
| SRR5643662 | five period of Gastrodia elata | 26.890 | |
| SRR5643663 | five period of Gastrodia elata | 13.610 | |
| SRR5643664 | five period of Gastrodia elata | 21.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 56.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 62.49 |
| Juven | Juvenile tuber | 19.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 309.70 | |
| Mother_Juven | Mother tuber of Juvenile | 248.13 |