Detail information of GWHGAAEX008765/evm.TU.scaffold_23.61


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672162374|ref|XP_008801008.1|4.72E-61PREDICTED: membrane-anchored ubiquitin-fold protein 3 isoform X2 [Phoenix dactylifera]
Swissprottr|Q6Z8K4|MUB3_ORYSJ1.00E-58Membrane-anchored ubiquitin-fold protein 3 (Precursor)
trEMBLtr|A6N1C4|A6N1C4_ORYSI9.00E-57Ubiquitin family protein {ECO:0000313|EMBL:ABR26044.1}
TAIRAT1G220502.00E-48membrane-anchored ubiquitin-fold protein 6 precursor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002516028591632751+
Transcript Sequence

Network for GWHGAAEX008765

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13881.5Rad60-SLD_271162.40E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.190
SRR2545915Juvenile tuber32.940
SRP108465SRR5643513five period of Gastrodia elata41.210
SRR5643514five period of Gastrodia elata34.690
SRR5643515five period of Gastrodia elata39.240
SRR5643524five period of Gastrodia elata45.760
SRR5643525five period of Gastrodia elata45.200
SRR5643528five period of Gastrodia elata67.400
SRR5643658five period of Gastrodia elata42.110
SRR5643659five period of Gastrodia elata38.600
SRR5643660five period of Gastrodia elata40.510
SRR5643661five period of Gastrodia elata35.380
SRR5643662five period of Gastrodia elata38.900
SRR5643663five period of Gastrodia elata37.060
SRR5643664five period of Gastrodia elata33.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.420
SRR6049655Rhizomagastrodiae_C368-T10_good_143.150
SRR6049656Rhizomagastrodiae_C368-T07_good_125.550
SRR6049657Rhizomagastrodiae_C368-T07_good_122.870
SRR6049658Rhizomagastrodiae_C368-T04_good_126.530
SRR6049659Rhizomagastrodiae_C368-T04_good_127.780
SRR6049660Rhizomagastrodiae_C368-T01_good_126.960
SRR6049661Rhizomagastrodiae_C368-T04_good_123.380
SRR6049662Rhizomagastrodiae_C368-T01_good_126.220
SRR6049663Rhizomagastrodiae_C368-T01_good_122.980
SRR6049664Rhizomagastrodiae_C368-T10_good_134.850
SRR6049665Rhizomagastrodiae_C368-T10_good_134.850
SRP279888GastroGastrodia elata tuber 40.64
JuvenJuvenile tuber27.68
Mother_GastroMother tuber of Gastrodia elata 61.95
Mother_JuvenMother tuber of Juvenile 58.63