Gene detail

Detail information of GWHGAAEX008769/evm.TU.scaffold_23.66

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2153	9.00E-154	Protein involved in the nuclear export of pre-ribosomes
nr	gi\|672180938\|ref\|XP_008810672.1\|	0	PREDICTED: LOW QUALITY PROTEIN: nucleolar complex protein 3 homolog [Phoenix dactylifera]
trEMBL	tr\|M0T8K0\|M0T8K0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P20020_001}
TAIR	AT1G79150	9.00E-154	binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	1707792	1733438	-

Transcript Sequence
>GWHTAAEX008769 TTTTTCTGAATGTTTAGAAAGAGTATTGCGATTCCCTGCCTAGGTTCGTCCTGTGGTATTGCGATTCCTTCCTTCATAACAGTCGCCAGTCACCACTACTACAGCCGCAGCTTCGTTCTGTCGTCGTCCAGGTTGATCAAGATTTTTGTTCGACTGTTTTCGTCTGTCGTCTAAATTTGCTCTGGAGTCGAAATGGGGAAGAAAAAGAAAGTGATTCTTCCACCGCAGCTTCCTCCTGATGTTCCGGATGAAGAAATTGAGGTTTCCGACGAGGATTTGGCTTTTGTGAACGAAAATCTTGAATACGCGGGCTTCCTCACTAAACTCGACACTAATTTGATAAACAGGCATGTCACTCGAGTTGCTGCTTGCAAGGAAGACGAGTTGGAAGCACTTTACGAGCGGAGGAAAAAGAAAGCTGCTTTGAAAGCAGAGGAGGAGGGGGTTCAAGTTGACCGTGTAGATGCTCTGCCTATCAAAACTTTAGAAGGAGAGCTGCGCTATAGAACAGCGGAGGAGTTGAATATTGCACTTAAAGAAACTAGGTCCTCATCCGAGGTCAAACATAATAATAATGAAAAAAATTTGGTGAAGCTTACAAAAGCAGAAAGAAGGCAAAAACTGAAGAAAAGTAAAAAGGAGGCTAAAAAGCAAGCCAAGGAGGAAATCAAAGAGTCTACCGCTGAAGGTGGTCTGCATTCAGATGTCTTGGCTAAGGTGGAGGAGGACCTTTCAGCTGAAGATTTATTTGCTAGAAAGAAAATTAAACTTGCGGAAGTCGGGATGGCATTACTTGAGGACCCTGAGTCACATATCAAATCCTTAAAAGAGTTGCTGCAAATCTGTACTGATGAAGATCATAAAATTATTAAGCTTGGCCTTATGTCACTATCAGCTGTTTTTAAGGATATTATTCCAGGCTACCGTATTCGTTTGCCAACTGAAAAGGAGCTGGAGATGAAAGTTTCAAAAGATGTTTTACAAACACGTTTTTACGAATCCACCCTTCTAAGCTCATACAAGGCATATCTTGTAAAGCTGATGGCCTTGGAGAAAGACCCCACATTTTATAGTGTTGCTGTTCGGTGCATGTGCATTTTATTAGATGCTGTGCCACACTTTAACTTTCGTGAGAATTTAGTAGCTATTGTTGTCAGAAATATAAGCTCGTCAGATGATGTCATAAGGAAATTATGCTGTGAAACTATAAGATCACTATTTACCAATGAGGGAAAGCATGGTGGCCAAGTGACCCTTGAAGCTGTTCGGTTGATTGCTGAGCTTGTAAAGACCAATGATTGCCAGCTCCATCCTGACAGCATAGAAGTATTTTTAGCTTTGGTTTTTGATGAAGATCTTGGTAAATCTGAGCCTAAGGAAGTGGAAAAGAAAAAAACAAGTAAGGGAAAGCGAAAACAACATCTTGAGCAATCAAATCAACATCCAATGAGTGAAGGTAAGAGGAGGAAGCAGGAACTAATGACAAAGGCGAGAGAAGAGTTAAGTGCAGATTTGAAGTCAGTATCATTTGCTCCTGATAGTGACGAACGAAGGAGGACACAGTCTGAAATACTCTCTGCTATTTTTGAAACATACTTTCGCATTCTAAAGCATTCGATGAATCCTTCTATTCCAAGGCCTATGTTGAATGATATTTGTTCAACCATTGGTATAGGGCAGCATCCTTTGCTTGGTCCATGCTTGGCAGGCTTGGGGAAGTTTTCACATTTGATTGATTTGAATTTTATGGGTGATTTAATGGGCTGCCTGAAAAAGCTTGCTGGACACAGTGACTCTTGCAATGATAATCCTTCAGGCAATTTAACAGTTTCTGAGAAGCTTCAATGCTGCATTGTGGCATTCCGGGTGATGAGGAATAATCTAGATGCACTTAATGTAGATCTTCAAGAGTTTTTTGTTCAGCTCTATAATCTTCTACTCGAGTACAGGCCTTTCAGAGATCGGGGTGATGTTTTGGCTGAAGCTTTGAAGACCATTCTTTGGGAAGGAAAGCAACATGATATGCACAGAGCAGCTGCTTTTGTAAAACGTCTCGCCACATTTTCTTTGAGTTTTGGCTCATCTGAAGCTATGGCAGCTTTGGTAACGCTAAAGCACCTTCTGCTAAGAAATAGCAAGTGCCGTAATCTACTGGAGAACGACCCTGGCGGCGGTTCACTATCCGGCCTAGTCGTGAAATACCAACCTGAAGCTTCGGATCCACACTTGAGTGGGGCTCTTGCCTCTGTGCTCTGGGAGCTCAGCCTGCTTTCCAAGCACTATAATCCTTCTGTATCAGGAATCGCTTCAGCCATATCAGGCATGACTGCTAGCATGAATCCTCCCTCTCAAACTCAAAAAGCCTACCTTTCCACTGCCTCTCCTCTGAAGGCCTACGAGGACTCGACGATTGAGCGAGAGCTCAATGTGGCCAAGAACAAGAAATCCTCCTCTAGCAAGAAGGGCAAGAGACGCTCCAGCGAGCTTGTTACTATGGATGCCAAGCAGATTCAGAAAGCGGAGGGCGGAGCAGATGAAGACTTCATCAGAGGCAAGTTTGAGGAGCAGTTTTCGGAGCTCATAGAGATTGCCGAAAACGAAAAGCTGAGGTTGGAGCTCCATCGAATATCTTCGGCCCTAAGGTTGTATGACGAGTATGAGGAGCAGATGAAGATGAAGTCGAGGCCCCAGCTGAAGAAGCAAAAGGTTAGATGATCCTGCTGTTGTTTATTTTGATTGGTGCTCAGGAGAGAGTTTTTATATGCGGATGATCTATTATTTATAAGTTTTTCATCGATATTGTGGTTAACTTTTGCACTTTCGCATTTTTTGTATTATTTTTGTACAATATTTGATTTCATATCGTAGCATTTTTATAAAGAAAAGCATTCCTTTGCTCTAAAAGTGTATTTTTCTTTTTCAAAATAAAAGTGTGCCAAATGA

Network for GWHGAAEX008769

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07540.10	NOC3p	189	279	5.30E-28
PF03914.16	CBF	550	705	1.20E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.080
SRP064423	SRR2545915	Juvenile tuber	21.760
SRP108465	SRR5643513	five period of Gastrodia elata	27.430
	SRR5643514	five period of Gastrodia elata	34.660
	SRR5643515	five period of Gastrodia elata	28.610
	SRR5643524	five period of Gastrodia elata	34.300
	SRR5643525	five period of Gastrodia elata	21.070
	SRR5643528	five period of Gastrodia elata	23.290
	SRR5643658	five period of Gastrodia elata	19.870
	SRR5643659	five period of Gastrodia elata	25.610
	SRR5643660	five period of Gastrodia elata	23.080
	SRR5643661	five period of Gastrodia elata	22.090
	SRR5643662	five period of Gastrodia elata	18.270
	SRR5643663	five period of Gastrodia elata	23.470
	SRR5643664	five period of Gastrodia elata	20.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.830
SRP279888	Gastro	Gastrodia elata tuber	36.94
	Juven	Juvenile tuber	38.32
	Mother_Gastro	Mother tuber of Gastrodia elata	33.06
	Mother_Juven	Mother tuber of Juvenile	38.70