Detail information of GWHGAAEX008779/evm.TU.scaffold_23.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166310|ref|YP_003404589.1| | 5.00E-55 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| nr | gi|695061414|ref|XP_009419138.1| | 0 | PREDICTED: pectinesterase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FJ21|PME58_ARATH | 2.00E-144 | Pectinesterase 58 (Precursor) |
| trEMBL | tr|B4FCY2|B4FCY2_MAIZE | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT5G49180 | 7.00E-144 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 2036432 | 2038752 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008779
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 46 | 185 | 5.70E-19 |
| PF01095.18 | Pectinesterase | 237 | 532 | 5.60E-129 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.150 |
| SRR2545915 | Juvenile tuber | 0.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.490 |
| SRR5643514 | five period of Gastrodia elata | 1.180 | |
| SRR5643515 | five period of Gastrodia elata | 0.110 | |
| SRR5643524 | five period of Gastrodia elata | 0.660 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.110 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 0.150 | |
| SRR5643660 | five period of Gastrodia elata | 0.100 | |
| SRR5643661 | five period of Gastrodia elata | 0.140 | |
| SRR5643662 | five period of Gastrodia elata | 0.100 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.09 |
| Juven | Juvenile tuber | 0.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.18 | |
| Mother_Juven | Mother tuber of Juvenile | 0.11 |