Detail information of GWHGAAEX008780/evm.TU.scaffold_23.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 2.00E-62 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|743849147|ref|XP_010939547.1| | 4.53E-72 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like [Elaeis guineensis] |
| Swissprot | tr|Q8S7W9|HOX21_ORYSJ | 3.00E-64 | Homeobox-leucine zipper protein HOX21 |
| trEMBL | tr|D6MKG5|D6MKG5_9ASPA | 2.00E-77 | Transcription factor {ECO:0000313|EMBL:ADG58012.1} (Fragment) |
| TAIR | AT1G69780 | 2.00E-62 | Homeobox-leucine zipper protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 2077844 | 2079530 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008780
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 27 | 80 | 3.70E-16 |
| PF02183.17 | HALZ | 82 | 122 | 4.20E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.220 |
| SRR2545915 | Juvenile tuber | 15.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.830 |
| SRR5643514 | five period of Gastrodia elata | 22.960 | |
| SRR5643515 | five period of Gastrodia elata | 10.550 | |
| SRR5643524 | five period of Gastrodia elata | 24.070 | |
| SRR5643525 | five period of Gastrodia elata | 2.340 | |
| SRR5643528 | five period of Gastrodia elata | 0.530 | |
| SRR5643658 | five period of Gastrodia elata | 0.740 | |
| SRR5643659 | five period of Gastrodia elata | 6.870 | |
| SRR5643660 | five period of Gastrodia elata | 19.700 | |
| SRR5643661 | five period of Gastrodia elata | 12.080 | |
| SRR5643662 | five period of Gastrodia elata | 1.960 | |
| SRR5643663 | five period of Gastrodia elata | 1.550 | |
| SRR5643664 | five period of Gastrodia elata | 2.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.66 |
| Juven | Juvenile tuber | 4.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.79 | |
| Mother_Juven | Mother tuber of Juvenile | 2.35 |