Detail information of GWHGAAEX008783/evm.TU.scaffold_23.81


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743849139|ref|XP_010939544.1|2.84E-114PREDICTED: protein vip1-like [Elaeis guineensis]
trEMBLtr|F2CVV3|F2CVV3_HORVD1.00E-98Predicted protein {ECO:0000313|EMBL:BAJ86974.1}
TAIRAT1G143402.00E-79RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002521307832161571-
Transcript Sequence

Network for GWHGAAEX008783

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_110681.50E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.960
SRR2545915Juvenile tuber47.790
SRP108465SRR5643513five period of Gastrodia elata61.840
SRR5643514five period of Gastrodia elata64.530
SRR5643515five period of Gastrodia elata57.540
SRR5643524five period of Gastrodia elata62.200
SRR5643525five period of Gastrodia elata101.290
SRR5643528five period of Gastrodia elata99.840
SRR5643658five period of Gastrodia elata121.600
SRR5643659five period of Gastrodia elata46.590
SRR5643660five period of Gastrodia elata54.770
SRR5643661five period of Gastrodia elata59.230
SRR5643662five period of Gastrodia elata58.510
SRR5643663five period of Gastrodia elata53.490
SRR5643664five period of Gastrodia elata65.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.440
SRR6049655Rhizomagastrodiae_C368-T10_good_154.120
SRR6049656Rhizomagastrodiae_C368-T07_good_154.970
SRR6049657Rhizomagastrodiae_C368-T07_good_156.310
SRR6049658Rhizomagastrodiae_C368-T04_good_165.550
SRR6049659Rhizomagastrodiae_C368-T04_good_168.890
SRR6049660Rhizomagastrodiae_C368-T01_good_151.980
SRR6049661Rhizomagastrodiae_C368-T04_good_151.620
SRR6049662Rhizomagastrodiae_C368-T01_good_152.550
SRR6049663Rhizomagastrodiae_C368-T01_good_156.390
SRR6049664Rhizomagastrodiae_C368-T10_good_170.870
SRR6049665Rhizomagastrodiae_C368-T10_good_170.870
SRP279888GastroGastrodia elata tuber 82.47
JuvenJuvenile tuber74.50
Mother_GastroMother tuber of Gastrodia elata 105.06
Mother_JuvenMother tuber of Juvenile 79.91