Gene detail

Detail information of GWHGAAEX008784/evm.TU.scaffold_23.82

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297565110\|ref\|YP_003684082.1\|	9.00E-14	Kelch repeat-containing protein [Meiothermus silvanus DSM 9946]
KOG	KOG1072	2.00E-173	FOG: Kelch repeat
nr	gi\|743849103\|ref\|XP_010939536.1\|	0	PREDICTED: F-box/kelch-repeat protein SKIP11-like [Elaeis guineensis]
Swissprot	tr\|Q8L736\|SKI11_ARATH	1.00E-167	F-box/kelch-repeat protein SKIP11
trEMBL	tr\|M0SML6\|M0SML6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P09990_001}
TAIR	AT1G14330	2.00E-173	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	2233680	2238971	+

Transcript Sequence
>GWHTAAEX008784 GCCTCACAGAGTAAAAAGGATGATTAGGAAAATAAAAAATAAATAGAGTGCTGGAATTTTGGGTGGGGGTCCGGGCGGCCCGTCGCGGCGAGGATAAAATAGGAAGCATCCCAAATCCGTCGCAGGGCTTCTGACCTGATTTCAGCCTCCGCTCTGCTTTTACTGCAAAGCAGGATCAATCGGAAGGCCGAATTGACGAAGGCAGTTCGGATGGAGAAACATTGACGATAACGGAGAGAGAAAAAGATTGACAAAGAGAATTCGATGGAATAGAAGATTTTGCCCTTCGACCAATCTCAGCTCTTTAGAGATTGGGGGAGCGTATTTTATGCAAAGGAGAGGAAATTAGGGTTGGGCAATCAATCTTGAGTTTTTTTTTTTGGCTCCTGCTATCCATAGGGATGCTTGAAGGCCGGTCCCGCTTAATTTCTAGGGCCTTGCCAAGCACCTATAAGCAAGAATCCAAGTGGGCATACATGACCCACAATCTGTTTGATGTTCTATCTGGAGAATCTGCTCAGGTTGGTGACAAAGATTGGGGAAGACGGATCAAGTGCCTAAAACTGTCTGATTCATCTACACATAATCCTGATTTTTGTGATTCAAATAACCTCATTGGCGTTATTGGACGAGATAATTCAATAAGCTGTCTTATGAGGTGCTCTCGCTCTGATTATGGCGCACTTGCCTCACTCAACAGCAGCTTTCGCTCTTTAATCAGGAGCGGAGAGCTCTACCGGATTCGCCGAATGAATGCAATCACTGAGCATTGGGTATACTTTTCATGCAACGTGAATGAGTGGGAAGCCTATGATCCTTATTGTGCTCGGTGGATCAATCTGCCTAGGATGCCCCATAATGAATGCTTCATGTGCTCTGATAAGGAGTCCCTCGCTGTTGGTACCGAGCTTCTCGTCTTTGGGAAAGAAGAGTTAGCCCACATTGTGCTGAGATATAGCATCCTTACAAACTCATGGTCTCCCGGTGTCCGAATGAACTCTTCCCGGTGCTTATTTGGCTCTGCTAGCTTGGGTGAGAAGGCCATTGTTGCGGGTGGAATCGATTCCCAATGCACCATACTAAGCTCTGCCGAGCTTTTCAATTCCGAGACACAAAGCTGGAAGACTCTACCAAGCATGAACAGACCGCGGAAGATGTGCTCAGGTGTATTTATGGATAAGAAGTTCTATGTGATTGGAGGAATGGCCAGCAACACTGAGTTGCTTACTTGCGGGGAGGAGTTTGATCTCGAGAAAGGCACTTGGAGGCTTATACCTAATATGTCGTTAGGCTTGAATGGAGCAAGCGGTGCGCCTCCGCTTATTGCGGTGGTTAACAACGAGCTTTATGCCGCACATTATGCACATCAAGAAGTGAGGAAGTATGATAAGCTAAACAATGTGTGGATCACTTTGGGGAGGCTTCCTGAAAGGCCAGTTTCAATGAACGGTTGGGGGCTTGCATTCAGGGCTTGTGGTGAACAGCTTGTTGTTATAGGTGGACCTAGGACATTGGGTGGAGGGGTGATTGAGCTTCACTCATGGGTTCCTAAAGAGGGGCAACTGCCCATGTGGAATATGATTGCTAGGAAACAATCAGGTAGCTTTGTTTATAATTGTGCAGTGATGGGTTGCTGATTGATCGGTTGGGGGTAGTTTCACTGCAAGCTGCGCATTTGGCTCGGCGGAACGCAAAGGCATGATGTGCCTGTTCTTCCTGACCGGCGCCCCCTGGCCCATTCTGGAATTTGGATTGTATTTGTGATTCAAAAGGACCTTCTTCATCAGTGTAACTTCAGAACTTCTTTGATTATTTTTGGAGTTTTATTTCTCTTTTTGTTTTTGCAATTTCTGTTATTGAACTCGTACTTTTAAGAAAACTAAACCCTGCCCCATTTTCTGTGAGGGTGGGGGTTTAGAGGTCTTGGGATCTTGTAGTGCAGTGCCAGATTAATAATACAATGTAGTTGATACTTTCTTTGGAAATTTTGTTTTATGTTAAATTTTGCACAACTTAACTGTTTTTACTGTTGTCTTTGTGAATGATTGAAGATGGCAATCCATATTGGTTGTGCAACTTTTCTGTAAGTATACAATTTGAAATTCTTATTTAATTTATATATTTACTTTGCCAGAATCCCTGTATTTTATTGTTGTTTTCACAGATTTTGGCCATGAAAGGTGGCTGCATGCGGTATGTTTTTCATTATATTATATCTTTTCAGCACTCTTAGAGTTCTTCTAAATATAAGTACATATGAGGTGGTGCCATGCATTTTAGAAATGAAGGATGAATTTTTTTTTTTTTTTGTAAATATTAAAATCTGGATGCTGTGCATGCATTTTATAAAGGTTTGAGCGTTCTCTTGGTAAAATCTCTTTATTTAAGCACAGTAGCGCTGTTCAGTTTGCAAAATTCTTCATTTGGCTTTAACGAATATGAAAAAGTTACTTACCACTTGGAGACAACAGAATCCGATTCTTATCTTTCATAACAATAAAATATGAATTTTTTCTCCATTATCTGCTACTGATGTGCATGTTTGGCTTAATAGCATAACTTTTGCTGAGTATGTAATTCAAGTTAATAATTCTTTCACGCAATTTAAAATATATTCCTTATGCTCATCTATCAGCACTGAGTATCTTTGAAAGTGGTTTCAATTTTAGAACTTACAGCATATTCACATTCAAGTCTAGGAACCTCATATCATATACTACTTGTATGTTTTATTTATTTAATTCCTTGTATTTATTTATTGAAATTTAAAAAATTTGATCTAATTTTTGTCTCCTTTTCTCATACCTAGTGAAAACCTAAAGGCGGGATAATCAACACACCAATAACACCTAGCCGTAGTCTCAATAAGTAGAGCTGGCTACGGGAATCCTGTGTATCCATCTTCAAGCTCCAAACAGAGCTCTAGTTTTCACCCTTAGTTCGTGCGAGTGGTTAGGAAAATGATGGAAAGCCTCAGTGGACGTCAATGTTTCGAGCAATAAGAAATTCTATCAAGTAGCTGAGTTACACATCTTCAAATTGAGCATGAACCCCGACTTAATGAATAACAAATTGCCTTATGAGAGAAGGGGCATCTGCCGGATCCAATGCCTAATAGAAGTGTAATACTAACACACTAAAGTAATTCAAAATACTTAATTAAATGTTATTGAGCTTTGTGCATATCCATTCTTTATTGAAAGTATAAAGATGCATTATATGGTAAAAGTTGTATAATATGCAAGCAATAGTGTTATTTTAATGGATAATAGACTCTTTCTCTCCCTCTCTTTATATATAATTGTGTTAAATGCATACATTTTTAT

Network for GWHGAAEX008784

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01344.24	Kelch_1	201	247	2.40E-10
PF01344.24	Kelch_1	249	295	5.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.830
SRP064423	SRR2545915	Juvenile tuber	28.310
SRP108465	SRR5643513	five period of Gastrodia elata	32.960
	SRR5643514	five period of Gastrodia elata	37.400
	SRR5643515	five period of Gastrodia elata	30.430
	SRR5643524	five period of Gastrodia elata	40.200
	SRR5643525	five period of Gastrodia elata	60.510
	SRR5643528	five period of Gastrodia elata	47.480
	SRR5643658	five period of Gastrodia elata	50.220
	SRR5643659	five period of Gastrodia elata	25.620
	SRR5643660	five period of Gastrodia elata	25.360
	SRR5643661	five period of Gastrodia elata	28.750
	SRR5643662	five period of Gastrodia elata	34.690
	SRR5643663	five period of Gastrodia elata	26.650
	SRR5643664	five period of Gastrodia elata	29.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	69.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.110
SRP279888	Gastro	Gastrodia elata tuber	36.31
	Juven	Juvenile tuber	33.14
	Mother_Gastro	Mother tuber of Gastrodia elata	59.94
	Mother_Juven	Mother tuber of Juvenile	47.35