Gene detail

Detail information of GWHGAAEX008785/evm.TU.scaffold_23.83

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2218	ER to golgi transport protein/RAD50-interacting protein 1
nr	gi\|672175988\|ref\|XP_008808057.1\|	PREDICTED: RAD50-interacting protein 1 [Phoenix dactylifera]
Swissprot	tr\|Q9STU3\|MAG2_ARATH	RINT1-like protein MAG2 {ECO:0000305}
trEMBL	tr\|M0UB15\|M0UB15_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP21070_001}
TAIR	AT3G47700	RINT-1 / TIP-1 family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	2245889	2282348	+

Transcript Sequence
>GWHTAAEX008785 GGGGCAGTGTTTCACAGCTCCTTTTGATAACTCTCTTGGGAAACTTATAAGCAGATGAACTGAGGGACATGGAGCTGGAAGGGGCTGATCGGCTGCCCCGCCCATCGGATCTTTCGCTGCAAATCCTCCATTTTCTCAATGGACAGTTTCAAGCGCCGATTGATCTCTCCAGATCTCCTGATGTTCTGTTGGAGCTCAGAAACCAGTGCTGCGATCTCGAGGCCTCTTTAGCCGATCTCAGCCACCGGCTTTCTGAAGGCATAACAGCTTATGCAACTCATTCGAACGATGTCTGCGCTCTCGTTGGAGCTGTCAGATCGGCTCTGGTTGATCAGCTGCAGCGCGCAGGGATTTCATATCGAGAAAGAGAAGAGATTGGGAGGAGAGGGAATATACTGGGGGAGGAGTTGCCAGCGCTTGCTAGAGAGGTGGCGCGAGTCGAGACTGTCCGGTCTTATGCAGAAACGGCCTTAAAGCTCGACAGTCTAGTGGGTGATGTTGAAGATGCTGTTTCTTCTTCGGTGGTTGGAAAGTTGAAATCTCCTCGGAAATCTAGTTCAGAGGAGACTCTCATGGCAGCCATCAGCTCTCTGAAAAAAATTGAGGACATCTTAGCATCCATTGCCAAAACAAGGCCTCAGTGGATTTGCCTCATCTCAGCTGTAGATCTAAGGATTGACCGAGCTCTGGCTATTCTTCGGCCACAGGCAATTGCAGACCATAGGTCTCTCCTTTCATCCATGGGCTGGCCCCCTCCACTGTCCGGTTCGAGTCTTTCATCCCAAAACACTGTGAAATCATCAGAATTTTCCAATCCTTTATTAACAATGAAGGGAGAACTAAAGGGTAAGTATAGCGCAAGTTTTCTTTCCCTCTGCCATTTGCAGGAGCTTCAATTTCAAAGAAAGGCTCGCTATCTCGATGACTATTGTAACACAGCAATAGACCTCCACCAGCCACTCTGGGTCATAGAGGAGCTGGTAAACCCGATCGCGCTTGCATCACAACATCATTTTTCCAAATGGGTGGACACGCCAGAGTTCATTTTTGCTCTCATTTTCAAGATCACTAGGGATTTTGTTGATTCTATGGATAATGTATTGCAGCCATGGGTGGACAGAGCCAGACTTGTGGGATATAGCTGCAGGGAAGAGTGGGTTTCCGCAATGGCGGCCTCGCTTTCCTTTTACTTAACTAAAGAGATCTTTCACAAATACACTGAGAACATAGAGTCGCACTGTTTGAGATGGCTTCAACTGATAGACCTTATGATATCTTTTGACAAGAGAATGCAAACATTATTGATAAGCTCAGGTTTTCCAATTTCCTTAAGGGAAGATGAGAGGCTGCAGCGACGATTGTCAGTTCTATCTGTTTTCTGCGATCGCCCAGATTGGCTTGACAGATGGGCTGAAATTGAGCTGGGAGAGGCGCTGGAGAATCTCAAATCCGCAATGCAGATGGAGAAGAACTGGAAGACAAAGATTCAAGGCACCACCATCCTGATGTCATTAAGCTCTCAAGATGATTTCAAATCTCCTGCAGTCTCCAACATAATTCTCAATTGCCTCTCTCTTATCATCGACCGGTCGAGGCCACTCCCGGCCATTTCCCTGAGATCAAGGTTCATAAAATTGGCCGGATTGCCGATGATCAGAGAATTTTCCGATTGCTTGTTGCGAAGGTGCCAGGAGTCCGAGGGCCTCACGGCTCTGGCCGATGATGACGCTATGATAAACGTATCGCACTCCATCAATGCGGCCCGGCACTGCGAGTCAACGTTGACTGAATGGTGTGAGGACGTGTTTTTTCTAGAGATCGAAACGGATGGAAGAAGCGGCTGTATCTTTGACGAGGAGCTCAAAATGTTGAAGAACTTTCCGGTCGATTGGTCCAAAAAGATCTCAGCTGTGATTTTAAGGGGGTTTGATGCACGGTGTCGGGATTATTTAAAGAACAAGAAGCAATGGCAGCAGGAGAAGAGCGAGGACGACCGGACGGGACTCAGAGCCTTTGTTGCTGCCGTGGACTTTCTGCAGGAAAAGATCTCAAAGCTTGAAGAAGAATTGAATGCCATCGACTTCACTGGGACATGGAGAGGTGTGGTCGCTGGTGTCGATCAATTGCTATTCGCCGGAGTTATTTTCGGCGGCACGAGGTTTTCTGATGCCGGCGTTGAAAGGCTGATGGGTGATGTGGCGATCCTGTTGAGTGTTTTCTCAGCTTGGTGTTTGAGGCCAGAGGGGTTTTTCCCTAAGCTGAGCGATGGCGTGAGGCTTTTGAGGATGGAGGAGAGGCAGCTCAGGCATGAATTGGTGACAGGGAAGGACTTATGGTTAAAAAAGAATGGTATAAGGCATCTGACCTTATTGGAGGCAGAGAAGATTGGTAAGAGCAGGTTTTATAACTAGGTTTTCCCTGCAAGGAGGATGAGCTTTGCTTCTGTTTGGTTAATTTCATCAGGGGCTGCTTGCTTCTTTTTTGTTAAATTTCATCAGCGGCTGCTTTTTTATCCATCCTTCTATGTGCAATTTTTCAATCCTATTTGTTTTCTATAATGTAATATATATTGTTTTTTTTTTTATATTTTTATTCATTCTTTTATAGAGATGAAGAACAATAATATATTATGGCAAACTTGTCATGATTTTAGTCTTTTTATATGATTTGTAAATACCCAAGCTTTTTGGCTCAAATCAAATATGAAGTAG

Network for GWHGAAEX008785

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04437.12	RINT1_TIP1	299	766	1.80E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048193	Biological Process	Golgi vesicle transport
GO:0005783	Cellular Component	endoplasmic reticulum

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.260
SRP064423	SRR2545915	Juvenile tuber	14.030
SRP108465	SRR5643513	five period of Gastrodia elata	20.930
	SRR5643514	five period of Gastrodia elata	20.990
	SRR5643515	five period of Gastrodia elata	21.940
	SRR5643524	five period of Gastrodia elata	19.120
	SRR5643525	five period of Gastrodia elata	35.180
	SRR5643528	five period of Gastrodia elata	45.910
	SRR5643658	five period of Gastrodia elata	31.290
	SRR5643659	five period of Gastrodia elata	20.020
	SRR5643660	five period of Gastrodia elata	18.740
	SRR5643661	five period of Gastrodia elata	20.410
	SRR5643662	five period of Gastrodia elata	22.000
	SRR5643663	five period of Gastrodia elata	20.760
	SRR5643664	five period of Gastrodia elata	22.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.260
SRP279888	Gastro	Gastrodia elata tuber	25.95
	Juven	Juvenile tuber	20.44
	Mother_Gastro	Mother tuber of Gastrodia elata	72.29
	Mother_Juven	Mother tuber of Juvenile	65.78