Detail information of GWHGAAEX008787/evm.TU.scaffold_23.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|156936976|ref|YP_001434772.1| | 2.00E-34 | 30S ribosomal protein S4 [Ignicoccus hospitalis KIN4/I] |
| KOG | KOG3301 | 2.00E-120 | Ribosomal protein S4 |
| nr | gi|672115391|ref|XP_008780681.1| | 2.01E-129 | PREDICTED: 40S ribosomal protein S9-2 [Phoenix dactylifera] |
| Swissprot | tr|Q9FLF0|RS92_ARATH | 7.00E-121 | 40S ribosomal protein S9-2 |
| trEMBL | tr|B9R982|B9R982_RICCO | 6.00E-122 | 40S ribosomal protein S9, putative {ECO:0000313|EMBL:EEF52159.1} |
| TAIR | AT5G39850 | 2.00E-120 | Ribosomal protein S4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 2357846 | 2369898 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008787
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00163.18 | Ribosomal_S4 | 12 | 64 | 2.20E-07 |
| PF01479.24 | S4 | 109 | 151 | 1.60E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02997 | RP-S9e, RPS9 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0019843 | Molecular Function | rRNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 62.720 |
| SRR2545915 | Juvenile tuber | 77.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 115.870 |
| SRR5643514 | five period of Gastrodia elata | 121.650 | |
| SRR5643515 | five period of Gastrodia elata | 112.530 | |
| SRR5643524 | five period of Gastrodia elata | 111.180 | |
| SRR5643525 | five period of Gastrodia elata | 100.260 | |
| SRR5643528 | five period of Gastrodia elata | 105.410 | |
| SRR5643658 | five period of Gastrodia elata | 80.450 | |
| SRR5643659 | five period of Gastrodia elata | 145.630 | |
| SRR5643660 | five period of Gastrodia elata | 138.150 | |
| SRR5643661 | five period of Gastrodia elata | 151.060 | |
| SRR5643662 | five period of Gastrodia elata | 132.130 | |
| SRR5643663 | five period of Gastrodia elata | 118.990 | |
| SRR5643664 | five period of Gastrodia elata | 128.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 130.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 72.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 135.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 120.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 127.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 121.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 133.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 121.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 152.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 151.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 167.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 167.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 149.37 |
| Juven | Juvenile tuber | 110.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.36 | |
| Mother_Juven | Mother tuber of Juvenile | 67.20 |