Detail information of GWHGAAEX008790/evm.TU.scaffold_23.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17058.00E-74Uncharacterized conserved protein, contains CXXC motifs
nrgi|255569385|ref|XP_002525660.1|1.13E-73Pre-mRNA-splicing factor ini1 [Ricinus communis]
Swissprottr|Q0WMV8|PHF5B_ARATH2.00E-74PHD finger-like domain-containing protein 5B
trEMBLtr|A0A067LGJ8|A0A067LGJ8_JATCU4.00E-74Uncharacterized protein {ECO:0000313|EMBL:KDP46478.1}
TAIRAT2G300008.00E-74PHF5-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002524432892443621-
Transcript Sequence

Network for GWHGAAEX008790

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03660.13PHF511041.10E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12834PHF5A Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398Biological ProcessmRNA splicing, via spliceosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms97.470
SRR2545915Juvenile tuber67.830
SRP108465SRR5643513five period of Gastrodia elata122.470
SRR5643514five period of Gastrodia elata83.890
SRR5643515five period of Gastrodia elata88.500
SRR5643524five period of Gastrodia elata83.650
SRR5643525five period of Gastrodia elata62.460
SRR5643528five period of Gastrodia elata70.880
SRR5643658five period of Gastrodia elata57.880
SRR5643659five period of Gastrodia elata107.020
SRR5643660five period of Gastrodia elata88.230
SRR5643661five period of Gastrodia elata118.560
SRR5643662five period of Gastrodia elata70.640
SRR5643663five period of Gastrodia elata78.670
SRR5643664five period of Gastrodia elata67.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1139.290
SRR6049655Rhizomagastrodiae_C368-T10_good_183.910
SRR6049656Rhizomagastrodiae_C368-T07_good_1148.640
SRR6049657Rhizomagastrodiae_C368-T07_good_1114.740
SRR6049658Rhizomagastrodiae_C368-T04_good_1123.470
SRR6049659Rhizomagastrodiae_C368-T04_good_1123.060
SRR6049660Rhizomagastrodiae_C368-T01_good_1142.510
SRR6049661Rhizomagastrodiae_C368-T04_good_1134.460
SRR6049662Rhizomagastrodiae_C368-T01_good_1136.180
SRR6049663Rhizomagastrodiae_C368-T01_good_1143.320
SRR6049664Rhizomagastrodiae_C368-T10_good_1171.750
SRR6049665Rhizomagastrodiae_C368-T10_good_1171.750
SRP279888GastroGastrodia elata tuber 104.59
JuvenJuvenile tuber79.67
Mother_GastroMother tuber of Gastrodia elata 89.18
Mother_JuvenMother tuber of Juvenile 66.30