Detail information of GWHGAAEX008792/evm.TU.scaffold_23.93
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428227219|ref|YP_007111316.1| | 0 | aspartyl/glutamyl-tRNA amidotransferase subunit A [Geitlerinema sp. PCC 7407] |
| KOG | KOG1211 | 0 | Amidases |
| nr | gi|743839822|ref|XP_010937105.1| | 0 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Elaeis guineensis] |
| Swissprot | tr|B6U151|GATA_MAIZE | 0 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor) |
| trEMBL | tr|M0TYR3|M0TYR3_MUSAM | 0 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000256|HAMAP-Rule:MF_03150} |
| TAIR | AT3G25660 | 0 | Amidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 2484745 | 2502168 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008792
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01425.20 | Amidase | 78 | 525 | 9.80E-141 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02433 | gatA, QRSL1 | Metabolic pathways | map01100 |
| Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0050567 | Molecular Function | glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity |
| GO:0030956 | Cellular Component | glutamyl-tRNA(Gln) amidotransferase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.270 |
| SRR2545915 | Juvenile tuber | 7.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.960 |
| SRR5643514 | five period of Gastrodia elata | 9.300 | |
| SRR5643515 | five period of Gastrodia elata | 8.270 | |
| SRR5643524 | five period of Gastrodia elata | 9.100 | |
| SRR5643525 | five period of Gastrodia elata | 12.010 | |
| SRR5643528 | five period of Gastrodia elata | 9.250 | |
| SRR5643658 | five period of Gastrodia elata | 8.950 | |
| SRR5643659 | five period of Gastrodia elata | 11.570 | |
| SRR5643660 | five period of Gastrodia elata | 10.720 | |
| SRR5643661 | five period of Gastrodia elata | 10.490 | |
| SRR5643662 | five period of Gastrodia elata | 13.670 | |
| SRR5643663 | five period of Gastrodia elata | 11.440 | |
| SRR5643664 | five period of Gastrodia elata | 11.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.29 |
| Juven | Juvenile tuber | 10.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.96 | |
| Mother_Juven | Mother tuber of Juvenile | 9.51 |