Gene detail

Detail information of GWHGAAEX008802/evm.TU.scaffold_23.105_evm.TU.scaffold_23.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|162148002\|ref\|YP_001602463.1\|	2.00E-80	ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
KOG	KOG0953	0	Mitochondrial RNA helicase SUV3, DEAD-box superfamily
nr	gi\|672108861\|ref\|XP_008787204.1\|	0	PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Phoenix dactylifera]
Swissprot	tr\|F4KFV7\|SUV3L_ARATH	0	ATP-dependent RNA helicase SUV3L, mitochondrial (Precursor)
trEMBL	tr\|A0A061EM92\|A0A061EM92_THECC	0	ATP-dependent RNA helicase SUPV3L1 isoform 1 {ECO:0000313\|EMBL:EOY03439.1}
TAIR	AT5G39840	0	ATP-dependent RNA helicase, mitochondrial, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	2699092	2729803	-

Transcript Sequence
>GWHTAAEX008802 GTTTTGCCTCCTGTTAGGCTAAATACCTAATACGTCCGTTGATCGCTCCTGGCGCTACCCCGTTTTCTTCTTCTCTCTTTCTCTTTCTGCTCAATCCAATCATTTCCACTGTCCCCCCAGAAGCTTGCAAGCCCGAATGGCGTCCTCCATCGTCCGAGTCCGCCATGCCCTGCCAAAGCTCAAACTCTTCTTCTCCTATGCTTATCTTCTTCCTCGTTTACCACCGCCATTAGGGCATAGGTTCTCCTCTCTTTCTTCCACTCTTCTCAATTCCGAATTCAGATTCATTTCACTATCTGGCCGCAACATCCTCCAATTAAACTCCATCTCCTTTTCAACCTCGTCGGAATCCATGCCTAAAACCGACCTAAACTCGGATTCTGATCCCGATAACCTGGACCCATCCAACGTCTACAGCGAGCTACGTCATGCCAAAGACTTCTCCGGGAAGCTCAACCGCCGTCAATGGAACTCCATTGTCGAAATCTTCCGTTCATTTGGCAAATCTCCCTGGGTCTCTGACCAGGTTCTTGCCGCATACATTCCTTCCTCCTTTTTCTCTTTTGCTGCCCGTAGCTTTCGCTACTTCTTCCTCGAGCGTTGTCCTCCTCACGTCTTTCTCAAACTTTCGGCACTTGGTCCTTCTCCCGAAGCCGATCGCTTTCTTCTCCCCATCTTCATTGACTATTGCCTCGAAGAGTTCCCCGATAAACTTCGCATCTTCAAATCCCTCATGGAGTCGGCCGACATGACGAAACCGCACTCTTGGTTTCCTTTTGCCCGCGCCATGAAGCGGAGGATCATTTATCACTGTGGCCCAACAAACAGCGGCAAGACGTACAACGCTCTCCAGAGTTTCATGGCGGCAAAGAAGGGAGTCTACTGCAGTCCTCTCCGGCTTCTTGCCGTGGAAGTCTTTGACAAGGTGAATGCTTTGGGAGTATATTGTAGTTTACATACAGGGCAAGAGAAAAAAAACGTTCCTTTTTCAAATCATGTTACTTGTACAATAGAAATGGTTTCCACCGATGAACTCTATGATGTTGCCGTGATTGATGAGGTTCAAATGATGTCAGACCTAAACAGAGGGCATGCATGGAGTAGGGCGCTTCTTGGTTTGAGAGCCGATGAGATTCATTTGTGCGGGGATCCTAGTGTCTTGAATATTGTCAAGAAGATATGTAAGGAGACTGGAGATGATCTCCATGTACACCAGTACTCCCGGTTTAAGCCATTGGTTGTCGAGGCAAAAACACTTTTGGGTGACTTGAAGAACGTTCAATCTGGAGATTGCATTGTGGCCTTCTCAAGGAGGGAGATTTTTGAGGTGAAGCTGGCGATTGAGAAGTTTACAAAGCACAAGTGCTGTGTGATTTATGGTGCATTGCCCCCGGAGACAAGGCGGCAGCAAGCAAAATTGTTTAATGATCAGGATAAGGAGCATGATGTTTTGGTAGCAAGTGATGCGATAGGAATGGGGCTGAATCTTAATATTAGAAGGGTTGTTTTCTATTCTTTATCGAAGTATAATGGCGATAAGATGGTGTCAGTCCCTGCTTCACAGATTAAGCAAATAGCCGGGCGAGCTGGAAGGAGAGGGAGTAGTTATCCAGATGGGTTGGTGACCACTTTCATTTTAAATGATTTGGATTATTTGATTGAGTGTTTGAAGCAGCCATTTGCAGAAGTAACCAAAGTTGGTCTATTTCCTTTTTTCGAGCAGGTCGAGTTGTTTTCTGCACAGTTTGCGGATTTTACTCTCTGCAAACTGCTGGAAAAATTTAGAGATACCTGCCGACTTGACGGATCCTATTTCTTATGCCAGCATGAGGATGTGAAGAAAGTTGCTAACATGCTTGAAAAGGTGCAAGATTTGTCGCTTGAGGAACGCTATAATTTCTGTTTTGCTCCCGTGAACACCAGGGATCCTAAGGCAATGTATCATTTGTTGCGATTTGCACAGCTCTATAGCCAAAACCGCCCTGTTGGCATAGCTATGGGGTTACCAAAGTGTTCTGCTCGGAATGATGCAGAACTCTTGGATCTTGAGACAAAGCATCAGGTGTTGTCTATGTATTTGTGGCTTTCGAATCAGTTCAACAAGGAAACTTTTCCATATGTACAGAAGGCTGAGGAAATGGCAGTTAGCGTTGCTGATTTACTCGGTATGTCACTTGCTAAAGCATGTTGGAAGCCTGAATCAAGATCACATGGGAAAGGCAAAAAGTTGAAGGAAGAAAATATTCAGGAGGAGTTGAATGCGACCACTGAAAATGTTTATGAGAGGCCTAGATCTCTTTTTGAATCTTTTACTAATCGCTTGCACGCTCTCACTCCTTGTTGGCCGCTCGATCGCTTCTCCGTTGCACGCTCGATCCTTGACGTCGGCCACTCGATCGCTGCATCCAGAAAACGGCGCCGCTCGATCCGCGACGAACCAAGCCGCTGCAACCGGAAAACGCCGCCGCTCGATCACTTCTCCGCAACCGAAAAACGCCGCCGCTGGATCGCTTCTCCGCCGCTGTTCAATCATCTGTTTAGTCATCGTCACAAAATTCATTTGTAAGTTTTTATTTCGTTTTAAGATTTTGCATTGGTTGAATTGCGCATCTGGGCAATCGTTTTGACATTTTGCAATGGCCAAGCTCCCAAATCATCTCTTCCACTTGTAATGAATTGAAAGGTGCATGACCTGATTGTAGGATTTATAAATGGTAGCTTTGTAAATGTTGAGATTGTGTGTATGTGAAACATGAAGAGGAGCAGGAAAATGATGCTCTGACAGAATAGAGAAGTGGTTGAAGGATTTGTAGATGGAAAATAATGAAAGAAGAATTGTAAGAGATGATTTGGGAATTTGAAGAGTTATAGTCGAAAAAATATATTTACAGTATTAAGGTTAACAGTAAAAATTAATGTGGCTGAATTTAGTCTCAATTTGAGGTTAACAGTAATGTCATCAA

Network for GWHGAAEX008802

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00271.30	Helicase_C	378	488	1.20E-13
PF12513.7	SUV3_C	634	681	7.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016817	Molecular Function	hydrolase activity, acting on acid anhydrides

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.820
SRP064423	SRR2545915	Juvenile tuber	9.660
SRP108465	SRR5643513	five period of Gastrodia elata	7.690
	SRR5643514	five period of Gastrodia elata	7.960
	SRR5643515	five period of Gastrodia elata	8.630
	SRR5643524	five period of Gastrodia elata	7.690
	SRR5643525	five period of Gastrodia elata	9.590
	SRR5643528	five period of Gastrodia elata	10.010
	SRR5643658	five period of Gastrodia elata	8.560
	SRR5643659	five period of Gastrodia elata	11.020
	SRR5643660	five period of Gastrodia elata	9.370
	SRR5643661	five period of Gastrodia elata	9.950
	SRR5643662	five period of Gastrodia elata	8.640
	SRR5643663	five period of Gastrodia elata	9.740
	SRR5643664	five period of Gastrodia elata	8.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.790
SRP279888	Gastro	Gastrodia elata tuber	7.18
	Juven	Juvenile tuber	7.68
	Mother_Gastro	Mother tuber of Gastrodia elata	9.01
	Mother_Juven	Mother tuber of Juvenile	8.13