Gene detail

Detail information of GWHGAAEX008805/evm.TU.scaffold_23.110

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|312137029\|ref\|YP_004004366.1\|	1.00E-58	arsenite efflux ATP-binding protein arsa [Methanothermus fervidus DSM 2088]
KOG	KOG2825	0	Putative arsenite-translocating ATPase
nr	gi\|586645152\|ref\|XP_006827440.1\|	0	hypothetical protein AMTR_s00009p00098080 [Amborella trichopoda]
trEMBL	tr\|W1NHA6\|W1NHA6_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERM94856.1}
TAIR	AT3G10350	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	2818082	2838812	-

Transcript Sequence
>GWHTAAEX008805 GCCTACTATAACCGAACTGTCCAAAGGTTTTTATAGCCAAAAGGAGTTCTAGGGTTCATCTGAGAGGTCCCATGGAGTGTAGCTAGTTGCCTCTTCTTCGCCGAAATTGGCGATGTTGCTATCTTCAGCGCTGTGTCTCGCCCGCAGCCTTTCTCTCATGGCGGCTCACCGAGGCTTCTCTTGGTGTCCCGCTTCTCAGGCTCTTTATCCCCGCGGCTTTGCTGTATTAAAAGTGAGGTCTGTTGCTATCCCGGCAAGATCTGTGGCAGATTTTGATGAGATGCTTGCTAGTACTAAGAGGAAATATTACTTGCTTGGAGGAAAAGGCGGTGTTGGGAAGACAAGTTGTGCAGCTTCATTAGCTGTAAAGTTTGCAAATAATGGACATCCCACACTTGTAGTCTCAACAGACCCTGCTCATTCTTTAAGCGATTCTTTTGCTCAGGACTTAACTGGAGGAGCATTGGTACCTGTTGATGGAGTTGATTCTCCGTTGTTTGCACTTGAGATAAATCCTGATAAGGCTCGGGAGGAATATCGTAGTACTAGTAAAAAAGCTGGTGGTACAGGAGTCAAAGATTTTATGGATAGCATGGGCCTTGGTATTCTTGCAGATCAGCTTGGAGAGCTAAAACTAGGAGAGCTTCTTGACACACCTCCCCCAGGATTAGATGAAGCAATTGCGATATCAAAGGTCATGCAATTTCTTGAATCACAGGAGTATAGTATGTTTAGCCGCATAGTTTTTGATACTGCTCCTACGGGCCATACTCTTCGACTTTTGTCTTTGCCAGATTTCTTAGATGCATCCATTGGCAAAATTTTGAAGCTAAAAAGGAAGATAACATCAGCAACATCAGCTATTAAATCAGTCTTTGGGCAGGAAGAGCAACAACAAGATCCTTCTGATAAACTGGAGCAATTAAGGGAGAGAATGCTCAAAGTAAGGGAACTTTTTCGCAATGCAGACTCAACTGAATTTGTTATTGTAACTATTCCAACGGTCATGGCAATTAACGAGTCGTCCAGACTTTCTGCGTCCTTGAAGAAAGAGTTCGTGCCTGTGAAGAAGCTTATTGTAAACCAGGTTCTGCCGCCTTCTACATCTGATTGCAAATTTTGTGCATTGAAACGGAAGGATCAACAGCGGGCGGTTGAGATAATTCAGAGTGATCCCGAGCTCATGGATCTGAAGCTGATCCAAGCGCCGCTGGTGGATGCGGAGATCAGAGGCGTTCCAGCCCTGAAATTTTTGGGTGACATTCTCTGGAAATAATAATAATAATAATATTTATTATTATTATAGGCATCACTATATATATATATGTTATGTGTGTGTGTATTATTATATGACTATTTATTAAAAAATTTCAGAAAAACAAGCATTTTTCTCAAATTTTACACATGCTTAACTCTTAAAATATTTACAATCAATAGCTAAAATTT

Network for GWHGAAEX008805

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02374.14	ArsA_ATPase	64	385	6.40E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	77.370
SRP064423	SRR2545915	Juvenile tuber	83.950
SRP108465	SRR5643513	five period of Gastrodia elata	56.880
	SRR5643514	five period of Gastrodia elata	60.590
	SRR5643515	five period of Gastrodia elata	59.320
	SRR5643524	five period of Gastrodia elata	56.060
	SRR5643525	five period of Gastrodia elata	47.480
	SRR5643528	five period of Gastrodia elata	43.610
	SRR5643658	five period of Gastrodia elata	41.880
	SRR5643659	five period of Gastrodia elata	67.660
	SRR5643660	five period of Gastrodia elata	67.260
	SRR5643661	five period of Gastrodia elata	65.530
	SRR5643662	five period of Gastrodia elata	77.330
	SRR5643663	five period of Gastrodia elata	78.170
	SRR5643664	five period of Gastrodia elata	72.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	71.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	71.710
SRP279888	Gastro	Gastrodia elata tuber	83.63
	Juven	Juvenile tuber	58.87
	Mother_Gastro	Mother tuber of Gastrodia elata	40.03
	Mother_Juven	Mother tuber of Juvenile	31.01