Detail information of GWHGAAEX008806/evm.TU.scaffold_23.111
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375147321|ref|YP_005009762.1| | 3.00E-47 | MIP family channel protein [Niastella koreensis GR20-10] |
| KOG | KOG0223 | 1.00E-64 | Aquaporin (major intrinsic protein family) |
| nr | gi|672108222|ref|XP_008784026.1| | 7.83E-123 | PREDICTED: aquaporin NIP2-1-like [Phoenix dactylifera] |
| Swissprot | tr|Q19KC1|NIP21_MAIZE | 2.00E-117 | Aquaporin NIP2-1 |
| trEMBL | tr|M0RMJ8|M0RMJ8_MUSAM | 4.00E-123 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P29740_001} |
| TAIR | AT5G37820 | 1.00E-64 | NOD26-like intrinsic protein 4;2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 2849003 | 2852592 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008806
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00230.19 | MIP | 34 | 243 | 2.40E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0015267 | Molecular Function | channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.270 |
| SRR2545915 | Juvenile tuber | 2.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.060 |
| SRR5643514 | five period of Gastrodia elata | 20.600 | |
| SRR5643515 | five period of Gastrodia elata | 10.300 | |
| SRR5643524 | five period of Gastrodia elata | 16.290 | |
| SRR5643525 | five period of Gastrodia elata | 0.420 | |
| SRR5643528 | five period of Gastrodia elata | 0.360 | |
| SRR5643658 | five period of Gastrodia elata | 0.330 | |
| SRR5643659 | five period of Gastrodia elata | 0.470 | |
| SRR5643660 | five period of Gastrodia elata | 0.640 | |
| SRR5643661 | five period of Gastrodia elata | 2.590 | |
| SRR5643662 | five period of Gastrodia elata | 1.140 | |
| SRR5643663 | five period of Gastrodia elata | 0.730 | |
| SRR5643664 | five period of Gastrodia elata | 0.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.65 |
| Juven | Juvenile tuber | 0.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.30 | |
| Mother_Juven | Mother tuber of Juvenile | 0.18 |