Detail information of GWHGAAEX008808/evm.TU.scaffold_23.113
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743801087|ref|XP_010926266.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g62260, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|O04590|PPR88_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g62260, mitochondrial (Precursor) |
| trEMBL | tr|K7V934|K7V934_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFW85241.1, ECO:0000313|EnsemblPlants:GRMZM2G094586_P01} |
| TAIR | AT1G62260 | 0 | mitochondrial editing factor 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 2894715 | 2898235 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008808
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 52 | 81 | 4.20E-08 |
| PF01535.19 | PPR | 83 | 114 | 0.1 |
| PF01535.19 | PPR | 117 | 146 | 2.40E-08 |
| PF01535.19 | PPR | 149 | 174 | 0.00018 |
| PF01535.19 | PPR | 179 | 201 | 0.27 |
| PF01535.19 | PPR | 216 | 239 | 0.00015 |
| PF01535.19 | PPR | 253 | 282 | 2.00E-08 |
| PF01535.19 | PPR | 284 | 308 | 4.20E-05 |
| PF01535.19 | PPR | 316 | 343 | 5.70E-05 |
| PF13041.5 | PPR_2 | 344 | 390 | 1.00E-10 |
| PF13041.5 | PPR_2 | 443 | 490 | 1.30E-09 |
| PF01535.19 | PPR | 519 | 543 | 0.27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.190 |
| SRR2545915 | Juvenile tuber | 1.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.060 |
| SRR5643514 | five period of Gastrodia elata | 2.850 | |
| SRR5643515 | five period of Gastrodia elata | 2.890 | |
| SRR5643524 | five period of Gastrodia elata | 2.240 | |
| SRR5643525 | five period of Gastrodia elata | 2.880 | |
| SRR5643528 | five period of Gastrodia elata | 2.350 | |
| SRR5643658 | five period of Gastrodia elata | 3.400 | |
| SRR5643659 | five period of Gastrodia elata | 4.910 | |
| SRR5643660 | five period of Gastrodia elata | 4.310 | |
| SRR5643661 | five period of Gastrodia elata | 5.240 | |
| SRR5643662 | five period of Gastrodia elata | 5.440 | |
| SRR5643663 | five period of Gastrodia elata | 5.150 | |
| SRR5643664 | five period of Gastrodia elata | 4.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.97 |
| Juven | Juvenile tuber | 5.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.48 | |
| Mother_Juven | Mother tuber of Juvenile | 2.59 |