Gene detail

Detail information of GWHGAAEX008810/evm.TU.scaffold_23.114

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1303	2.00E-79	Amino acid transporters
nr	gi\|672165393\|ref\|XP_008802597.1\|	6.12E-114	PREDICTED: vacuolar amino acid transporter 1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9FKS8\|LHT1_ARATH	6.00E-10	Lysine histidine transporter 1
trEMBL	tr\|M0TIK1\|M0TIK1_MUSAM	1.00E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P18140_001}
TAIR	AT5G15240	2.00E-79	Transmembrane amino acid transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	2915673	2917445	+

Transcript Sequence
>GWHTAAEX008810 TAAGAAAATATAGCTTTTCTTAGAAGTTCTTAAGACGAGAAATAGTCATTTTCAAAAAAGAAATGCATACATTAAAGTAAGAAAGGAAAAAAAAATGGTACCCAAAATCTTATAAAAGTGATGTGTCAAGCAAGATAAGTAACGTTCGGAATTAGTCCACACATTTTAACATATGTGCTAAGTTAGAAAATATATATTTGTTGCGTCAGCCAATCCAAAGTAGAATAAGTTTGAGACACAGGAAATAAATGTATTTGAGTTACAGCTGAGTTTTGAGGTGCACATTGGCTTACTAAGCTGGCTTCAGTTCAACTTCAATAGCCCTTATGCCGGAGTAAGGCTGAGCCCCAAAGTTGCTCCATTGATGCTTTATGTTCTAACAAAATTTAGGCTGATTTAATCATAATCAACAATAAAAAATATATCACACTAATGCATTCTTATATATATAAATTGTTGTATCATCATTTCTAATTTTTATTTAAGTTTTGTTCTAAAATAACACCACTTATTTTATATTATAAATAATTTGCAATTTCCATCTTTTTTTGGTCCACTTATGCTAGAAATTAACCTTTGTATTTTAGCCTTTGCTAATTATATTTGAAATTCTTATAGCAATTAATATTCACATTATTATTATTTTTTGGATTAAAATATGATTTTTTTTGGGTTTTTTTGTTAGTTTATAGTTTTTTTTATAATATTTAAAAATGGATGTTAAATGGAAATAAGTTTGTATTGTCAACGTCCTCTCCTCGTCCTGCCCACCACGTGGCTGCGGAATCTCGGCATTCTGGCCTACGTGTCCGCCTGCGGTATCCTGGCCTCGCTCGTCTTGACGGCTTCCGTCTCGTGGGCCGGAGCGGTTGACGGCGTCGGATTTCGCGGAAGAGGGACTCCCCTCCGTTGGACCGGAATGCCCTCTGCGGTCAACTTCTTCGCTTTCTGCTACAGTGCTCATGCGGTCTACCCTACGCTCTACGCTTCCATGGCCGACAAAACCAAGTTCTCTCGCGTTCTATTCCTCTGTTTCGCCGTCTGCACCATCAATTACGGAGCAATGGCGGTGATCGGATACCTCATGTTCGGCGAAGACACAAAATCTCAAATAACTCTGAATCTTCCGGTGGAAAAAATAAGTTCGAAAATTGCAATTTACACCACGTTAATGAACCCGCTGACAAAATACGCCCTGATTCTGACGCCCGTTGCGGAGGCCATTGAAGACCTGTTCCATGTGTCGAAGAATCGGTTCTTCGGCGTTCTGATCAGAACGCTTCTGGTGGTTTGCACTGCAACTGTAGCTTTGACGGTGCCCTTTTTCGGATACGTTGTAGCTCTTACTGGCTCCTTCCTCAGCAGCAGCGCCACCATGGTTCTTCCTTGTTTGTGCTATGTTAAGATATTTAAGAGGTCGATGCGTTGGAGTGTGGAATCAGCAGTGATTGTAGCTATTGTGCTGATGGGAGCCGTTGTTGCAGTCCTCGGAACTTGTGTTTCCATGAAGCACAGATTATAGCAAGTCTCTGAAATCAAGGATAAATATATGAGAATTATACAAGGGGTGCATACTCACATGAGAACTATAACTTAGGCGTAAGGCAAGCCATGGATTTCTTTTTTTGAAAATTAACTGATTTTTAATTATGAACATGAAATATTATATCTTGAACTTCAACCTCTCAACCCACAGATTTGTTTGGATTTGAGGTAAAATAAGCGTAAATTAAATTCTTTTTGGATAAATTGAGATTGTCAAACGAAAAGGTG

Network for GWHGAAEX008810

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	12	260	8.00E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.720
SRP064423	SRR2545915	Juvenile tuber	2.510
SRP108465	SRR5643513	five period of Gastrodia elata	17.880
	SRR5643514	five period of Gastrodia elata	14.220
	SRR5643515	five period of Gastrodia elata	10.950
	SRR5643524	five period of Gastrodia elata	9.560
	SRR5643525	five period of Gastrodia elata	3.300
	SRR5643528	five period of Gastrodia elata	2.730
	SRR5643658	five period of Gastrodia elata	4.660
	SRR5643659	five period of Gastrodia elata	2.920
	SRR5643660	five period of Gastrodia elata	2.130
	SRR5643661	five period of Gastrodia elata	2.090
	SRR5643662	five period of Gastrodia elata	2.250
	SRR5643663	five period of Gastrodia elata	3.510
	SRR5643664	five period of Gastrodia elata	2.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.030
SRP279888	Gastro	Gastrodia elata tuber	7.27
	Juven	Juvenile tuber	13.47
	Mother_Gastro	Mother tuber of Gastrodia elata	4.13
	Mother_Juven	Mother tuber of Juvenile	6.56